2011/04/28

[GAMESS] 1,3,5-trimethylbenzene (1,3,5-トリメチルベンゼン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of 1,3,5-trimethylbenzene (1,3,5-トリメチルベンゼン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -5.9659457351 4.4777979712 0.0019876482
C 6.0 -7.2234316034 3.8630935305 -0.0082003845
C 6.0 -7.3376679775 2.4670158452 -0.0064536332
C 6.0 -4.8132873658 3.6801026635 0.0134309880
C 6.0 -4.9083303843 2.2842426913 0.0136262520
C 6.0 -6.1754710889 1.6863379891 0.0039836413
C 6.0 -8.6829389701 1.8034223409 -0.0188021587
H 1.0 -8.1222221747 4.4761578868 -0.0172789825
C 6.0 -5.8381085044 5.9725463361 0.0014833819
H 1.0 -6.8185352572 6.4601332595 -0.0115380288
H 1.0 -5.2872408346 6.3035881584 -0.8847008493
H 1.0 -5.3094513400 6.3059849093 0.9001985956
C 6.0 -3.6779727530 1.4264597075 0.0268722617
H 1.0 -6.2570130629 0.6009842772 0.0046660679
H 1.0 -3.8347209188 4.1560131487 0.0219040752
H 1.0 -2.7655512827 2.0318773290 0.0178737829
H 1.0 -3.6593798240 0.7797087111 -0.8561763463
H 1.0 -3.6607447125 0.8060907185 0.9286305382
H 1.0 -9.4946176255 2.5380906921 -0.0087621125
H 1.0 -8.7970910890 1.1662138614 0.8641299816
H 1.0 -8.7932755551 1.1927879348 -0.9207332365
$END
to here -----

Results of geometrical optimization...
HOMO (-6.34 eV):

1,3,5-trimethylbenzene.png

LUMO (+0.24 eV):

1,3,5-trimethylbenzene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

第182回 新反応解析プロジェクト。

☆Done
DFT計算12ジョブ投入・11ジョブ解析、論文書き、雑務。

☆レガシーメディア
NEDO、“情報保持メモリー”活用した省エネIT開発プロの参加者公募(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0220110428aaao.html

環境省、カーボンニュートラル普及へ今夏めど指針(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0520110428caar.html

京大、色素増感太陽電池の界面に色素集まる現象を解明(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720110428eabe.html

☆Weblog
旭化成、サウジでのアクリロニトリル事業化のため合弁会社設立(化学業界の話題)
http://knak.cocolog-nifty.com/blog/2011/04/post-184b.html

第1170回 引き締めに向かう世界経済(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/63244132.html

☆論文・総説
Energy transfer cassettes in silica nanoparticles target intracellular organelles (Org. Biomol. Chem.)
http://pubs.rsc.org/en/content/articlelanding/2011/ob/c0ob00967a

Photochemical intramolecular cyclization of o-alkynylaryl isocyanides with organic dichalcogenides leading to 2,4-bischalcogenated quinolines (Org. Biomol. Chem.)
http://pubs.rsc.org/en/content/articlelanding/2011/ob/c0ob01168a

2011/04/27

[GAMESS] 1,2,3-trimethylbenzene (1,2,3-トリメチルベンゼン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of 1,2,3-trimethylbenzene (1,2,3-トリメチルベンゼン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -5.9409048280 4.2871345994 0.0024651075
C 6.0 -7.2023867911 3.6702563056 -0.0050554900
C 6.0 -7.3194601110 2.2846405084 -0.0055482277
C 6.0 -4.7703360312 3.4893196371 0.0099396455
C 6.0 -4.8967213827 2.0791543740 0.0063318653
C 6.0 -6.1752906355 1.4960362426 0.0005453248
H 1.0 -8.3017003059 1.8205567933 -0.0104753432
H 1.0 -8.1089152100 4.2717761720 -0.0101471588
C 6.0 -3.3989892344 4.1187608433 0.0194853411
C 6.0 -5.8863187242 5.7920115773 0.0029777259
H 1.0 -6.2805741926 0.4130160951 0.0008874779
C 6.0 -3.7186208112 1.1397903659 0.0175143536
H 1.0 -6.8891747845 6.2328039009 -0.0058067693
H 1.0 -5.3645221327 6.1540483540 -0.8885901489
H 1.0 -5.3801109381 6.1540632613 0.9034693337
H 1.0 -3.4228114749 5.2107176527 0.0315959626
H 1.0 -2.8448086723 3.8235075474 -0.8776969975
H 1.0 -2.8482414105 3.8046257536 0.9123849087
H 1.0 -2.7545734698 1.6515122978 -0.0215058100
H 1.0 -3.7665826608 0.4733167195 -0.8504037017
H 1.0 -3.7344209463 0.5362835050 0.9312411759
$END
to here -----

Results of geometrical optimization...
HOMO (-6.07 eV):

1,2,3-trimethylbenzene_homo.png

LUMO (+0.30 eV):

1,2,3-trimethylbenzene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

第181回 GC修理。

☆Done
DFT計算9ジョブ投入・9ジョブ解析、研究室ゼミ、雑務。

☆レガシーメディア
産総研、触媒にグラフェン使ったリチウム空気電池-酸化しにくく大容量(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0320110427eaap.html

東日本大震災 過水 供給改善の兆し 停止工場順次再開へ(化学工業日報)
http://www.kagakukogyonippo.com/headline/2011/04/27-1454.html

東日本大震災 企業動向(化学工業日報)
http://www.kagakukogyonippo.com/headline/2011/04/27-1452.html

☆Weblog
花見(大学教授のぶっちゃけ話)
http://junjikido.cocolog-nifty.com/blog/2011/04/post-502b.html

☆論文・総説
An easy access to styrenes: trans aryl 1,3-, 1,4- and 1,5-dienes, and 1,3,5-trienes by Hiyama cross-coupling catalyzed by palladium nanoparticles (New J. Chem.)
http://pubs.rsc.org/en/content/articlelanding/2011/nj/c0nj01019g

2011/04/26

[GAMESS] ethylbenzene (エチルベンゼン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of ethylbenzene (エチルベンゼン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -5.9286792497 3.7068217965 0.2637959814
C 6.0 -7.2016637979 3.2349301522 -0.0829800305
C 6.0 -7.3841664638 1.9129860510 -0.4989867837
C 6.0 -4.8443201081 2.8172353222 0.1820132790
C 6.0 -5.0268189141 1.4965693059 -0.2336197380
C 6.0 -6.2979529920 1.0443945089 -0.5743328125
H 1.0 -6.4429170307 0.0175108824 -0.8980103256
H 1.0 -8.3780104929 1.5621113035 -0.7645985792
H 1.0 -4.1759983412 0.8231339387 -0.2906158251
C 6.0 -5.6545345345 5.1213943759 0.7218988068
H 1.0 -3.8431554925 3.1532540672 0.4444883492
H 1.0 -8.0733612910 3.8817440111 -0.0371856675
C 6.0 -6.8478295579 6.0650719251 0.8016054880
H 1.0 -4.9173436827 5.5631340796 0.0395908840
H 1.0 -5.1925387399 5.0735432865 1.7160804773
H 1.0 -7.3233437709 6.1903396327 -0.1768282263
H 1.0 -6.5222820430 7.0529833378 1.1435532771
H 1.0 -7.5999134422 5.6983055393 1.5079991634
$END
to here -----

Results of geometrical optimization...
HOMO (-6.29 eV):

ehtylbenzne_homo.png

LUMO (+0.22 eV):

ehtylbenzne_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

第180回 MOディスク廃棄

☆Done
DFT計算2ジョブ投入・3ジョブ解析、論文書き、雑務。

☆レガシーメディア
米国化学会、化学物質の最適な反応経路を自動検索するツール開発(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720110426eaac.html

東日本大震災 企業動向(化学工業日報)
http://www.kagakukogyonippo.com/headline/2011/04/26-1435.html

☆Weblog
有機化学系あれこれ 2011/4/26(気ままに有機化学
http://chemistry4410.seesaa.net/article/197748892.html

選挙(大学教授のぶっちゃけ話)
http://junjikido.cocolog-nifty.com/blog/2011/04/post-1b63.html

☆論文・総説
Refractive Index Sensitivities of Noble Metal Nanocrystals: The Effects of Multipolar Plasmon Resonances and the Metal Type (J. Phys. Chem. C)
http://pubs.acs.org/doi/abs/10.1021/jp202574r

2011/04/25

[GAMESS] 1,2-dimethoxybenzene (1,2-ジメトキシベンゼン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of 1,2-dimethoxybenzene (1,2-ジメトキシベンゼン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -5.9875242476 4.1948255628 0.1417769150
C 6.0 -7.2908825314 3.6864608587 0.0441924729
C 6.0 -7.5138611555 2.3268948239 -0.1939403265
C 6.0 -4.9058428580 3.3040025877 0.0239602948
C 6.0 -5.1388971543 1.9485854974 -0.2426259661
C 6.0 -6.4379941477 1.4584026083 -0.3448420152
H 1.0 -8.1619053852 4.3257941975 0.1424638097
O 8.0 -5.6993442813 5.5210212031 0.3275271565
C 6.0 -6.7788573538 6.4448516770 0.2998649615
H 1.0 -6.6079171342 0.4034722240 -0.5421017042
O 8.0 -3.5748178699 3.6350760251 0.0829608642
H 1.0 -8.5304789121 1.9492925016 -0.2712355915
H 1.0 -4.2955903973 1.2729836840 -0.3618423567
C 6.0 -3.2275431781 4.5689898123 1.1001787360
H 1.0 -7.3163302839 6.4005526575 -0.6532244616
H 1.0 -6.3594628817 7.4507757672 0.3976060194
H 1.0 -7.4550304970 6.2843081757 1.1458506019
H 1.0 -3.2708023340 5.5901873684 0.7106320342
H 1.0 -2.1892117472 4.3735289535 1.3865707107
H 1.0 -3.8424479693 4.4609643055 2.0007123240
$END
to here -----

Results of geometrical optimization...
HOMO (-5.63 eV):

1,2-dimethoxybenzene_homo.png

LUMO (+0.30 eV):

1,2-dimethoxybenzene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

第179回 中間体見つかる。ふたつ。

☆Done
DFT計算4ジョブ投入・6ジョブ解析、論文書き、雑務。

☆レガシーメディア
東大、量子ドット太陽電池の理論変換効率75%に(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720110425eaao.html

東日本大震災 企業動向(化学工業日報)
http://www.kagakukogyonippo.com/headline/2011/04/25-1401.html

☆Weblog
現代化学5月号(有機化学美術館・分館)
http://blog.livedoor.jp/route408/archives/51810712.html

メディシナル vs. プロセス(企業の研究員の日常)
http://researcher-station.blogspot.com/2011/04/vs.html

第1167回 今週の予定(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/63224063.html

☆論文・総説
Transition-metal-catalyzed C–C bond formation through the fixation of carbon dioxide (Chem. Soc. Rev.)
http://pubs.rsc.org/en/content/articlelanding/2011/cs/c0cs00129e

Ball milling in organic synthesis: solutions and challenges (Chem. Soc. Rev.)
http://pubs.rsc.org/en/content/articlelanding/2011/cs/c0cs00195c

2011/04/22

[GAMESS] 1,2,4-trimethylbenzene (1,2,4-トリメチルベンゼン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of 1,2,4-trimethylbenzene (1,2,4-トリメチルベンゼン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -5.9418775520 4.3911316638 0.0023650253
C 6.0 -7.2012831265 3.7700404098 -0.0050242268
C 6.0 -7.3177691455 2.3794880082 -0.0043128445
C 6.0 -4.7845369268 3.5899078470 0.0120318797
C 6.0 -4.9184386619 2.1882489432 0.0117891272
C 6.0 -6.1763628002 1.5758586780 0.0032698529
H 1.0 -8.3068818230 1.9276756867 -0.0100047237
H 1.0 -8.1087216641 4.3701741828 -0.0115657141
C 6.0 -3.3907436660 4.1564636717 0.0185863232
C 6.0 -5.8735778502 5.8930490088 0.0008444821
C 6.0 -6.3104207786 0.0824423955 0.0052116606
H 1.0 -6.8723660917 6.3425672703 -0.0113057256
H 1.0 -5.3440942416 6.2485779726 -0.8888681596
H 1.0 -5.3645212244 6.2511138102 0.9014009532
H 1.0 -3.3723360103 5.2488211201 0.0385751879
H 1.0 -2.8539440478 3.8343709115 -0.8799671494
H 1.0 -2.8495169753 3.8041142272 0.9031090739
H 1.0 -4.0222142245 1.5700119733 0.0182438138
H 1.0 -5.3321840842 -0.4094380406 -0.0045804597
H 1.0 -6.8602594267 -0.2482891883 -0.8818144324
H 1.0 -6.8431475748 -0.2470251393 0.9030328729
$END
to here -----

Results of geometrical optimization...
HOMO (-5.93 eV):

1,2,4-trimethylbenzene_homo.png

LUMO (+0.30 eV):

1,2,4-trimethylbenzene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

第178回 PDF変換多数。おかげで机が広くなった。

☆Done
DFTkeisann4ジョブ投入・3ジョブ解析、雑務。

☆レガシーメディア
ハエは味より栄養価重視-九州大が発見(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx1020110422eaag.html

クラレ、太陽光発電向け集光レンズに参入(日刊工業新聞)

http://www.nikkan.co.jp/news/nkx0820110422cbab.html


東日本大震災 企業動向(化学工業日報)
http://www.kagakukogyonippo.com/headline/2011/04/22-1381.html

☆Weblog
第1165回 中国と欧州(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/63204792.html

和歌山(大学教授のぶっちゃけ話)
http://junjikido.cocolog-nifty.com/blog/2011/04/post-b8d3.html

☆論文・総説
Very Large Silacylic Substituent Effects on Response in Silole-Based Polymer Transistors (Chem. Mater.)
http://pubs.acs.org/doi/abs/10.1021/cm200009k

Copper-mediated methylthiolation of aryl halides with DMSO (Chem. Commun.)
http://pubs.rsc.org/en/content/articlelanding/2011/cc/c1cc10795j

2011/04/21

[GAMESS] 1,3,5-trifluorobenzene (1,3,5-トリフルオロベンゼン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of 1,3,5-trifluorobenzene (1,3,5-トリフルオロベンゼン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -5.8680523576 3.5779472791 0.3127972471
C 6.0 -6.7822942054 2.8906998805 1.1023897027
C 6.0 -7.1473005668 1.6005788618 0.7363560038
C 6.0 -5.3207774668 2.9973618509 -0.8251980560
C 6.0 -5.7029759405 1.7059923784 -1.1685529765
C 6.0 -6.6152571927 0.9964567880 -0.3965913724
F 9.0 -8.0273379341 0.9275964616 1.4887298191
F 9.0 -5.5080402304 4.8217354813 0.6545860901
H 1.0 -7.2029533507 3.3524312968 1.9874769810
F 9.0 -5.1829507004 1.1351865765 -2.2627156349
H 1.0 -6.9064748654 -0.0096643072 -0.6730730470
H 1.0 -4.6089006488 3.5417515299 -1.4338036598
$END
to here -----

Results of geometrical optimization...
two HOMOs (-0.70 eV):

1,3,5-trifluorobenzene_homo1.png

1,3,5-trifluorobenzene_homo2.png

two LUMOs (-0.03 eV):

1,3,5-trifluorobenzene_lumo1.png

1,3,5-trifluorobenzene_lumo2.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

第177回 NMR講習会打ち合わせ

☆Done
DFT計算2ジョブ投入・3ジョブ解析、論文書き、雑務。

☆レガシーメディア
原子力機構、溶媒抽出法使った装置改良で放射性廃液浄化に道(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0820110421aaas.html

東日本大震災 企業動向(化学工業日報)
http://www.kagakukogyonippo.com/headline/2011/04/21-1372.html
http://www.kagakukogyonippo.com/headline/2011/04/21-1373.html

☆Weblog
第1164回 さらに追い込まれるPIGS(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/63197887.html

indeno[1,2-b]fluorenes (Computational Organic Chemistry)
http://comporgchem.com/blog/?p=1473

☆論文・総説

2011/04/20

[GAMESS] 1,2,4-trifluorobenzene (1,2,4-トリフルオロベンゼン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of 1,2,4-trifluorobenzene (1,2,4-トリフルオロベンゼン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -5.8715883333 3.5606077364 0.3060039919
C 6.0 -6.7873170865 2.8711977149 1.0961797960
C 6.0 -7.1612136102 1.5747127474 0.7380380506
C 6.0 -5.3316633066 2.9655708171 -0.8316306955
C 6.0 -5.6977058886 1.6757317673 -1.1960578846
C 6.0 -6.6125993829 0.9913314748 -0.4036644762
H 1.0 -7.8732311542 1.0162342443 1.3373865364
F 9.0 -5.5134025735 4.8043621927 0.6502683877
H 1.0 -7.2012415210 3.3459440059 1.9807843299
F 9.0 -4.4505511317 3.6356680585 -1.5874098046
F 9.0 -6.9746865322 -0.2525234759 -0.7426597808
H 1.0 -5.2784351220 1.2123341118 -2.0803636508
$END
to here -----

Results of geometrical optimization...
HOMO (-6.64 eV):

1,2,4-trifluorobenzene_homo.png

LUMO (-0.57 eV):

1,2,4-trifluorobenzene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

第176回 FAX受信機が…

3ヶ月に1度しか受信することないFAX受信機が壊れかけている。
PCで代用できないものか。

☆Done
DFT計算1ジョブ投入・2ジョブ解析、論文書き、ゼミ(抄録会)、雑務。

☆レガシーメディア
米アップル、「iPhone」液晶を東芝に絞る(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0320110420aaas.html

東日本大震災 企業動向(化学工業日報)
http://www.kagakukogyonippo.com/headline/2011/04/20-1345.html

☆Weblog
まだこの世にない化合物(有機化学美術館・分館)
http://blog.livedoor.jp/route408/archives/51807587.html

第1163回 何処も同じ財政健全化圧力と景気回復(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/63190381.html

☆論文・総説
Functionalization of Rhenium Aryl Bonds by O-Atom Transfer (Organometallics)
http://pubs.acs.org/doi/abs/10.1021/om2002365

2011/04/19

[GAMESS] 1,2,3-trifluorobenzene (1,2,3-トリフルオロベンゼン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of 1,2,3-trifluorobenzene (1,2,3-トリフルオロベンゼン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -5.8717125647 3.5387682454 0.2915258106
C 6.0 -6.7887678384 2.8464608230 1.0815727535
C 6.0 -7.1666985796 1.5494436137 0.7285922071
C 6.0 -5.3302225069 2.9509607864 -0.8434006765
C 6.0 -5.7084853612 1.6605995713 -1.1914626576
C 6.0 -6.6236977737 0.9545100910 -0.4131803183
H 1.0 -7.8816523619 1.0035719540 1.3404126304
F 9.0 -5.1944735099 1.0795125068 -2.2842957489
F 9.0 -5.5170128117 4.7830078296 0.6408839053
H 1.0 -7.2012697459 3.3237751878 1.9659539416
F 9.0 -4.4490983455 3.6231821598 -1.5977714906
H 1.0 -6.9071390134 -0.0536340862 -0.7016558592
$END
to here -----

Results of geometrical optimization...
HOMO (-6.88 eV):

1,2,3-trifluorobenzene_homo.png

LUMO (-0.33 eV):

1,2,3-trifluorobenzene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

第175回 妙な天気

低い雲は南西へ、高い雲は北東に向かって流れている。風向きは北東。放射性物質の流れに注目。

☆Done
DFT計算2ジョブ投入・2ジョブ解析、論文書き、雑務。

☆レガシーメディア
東北大など、胃腸薬で視細胞の死抑制-網膜剥離の治療に道(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720110419eabb.html

日本工大、新入社員・幹部候補向け金型教育の講座開講(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720110419bbab.html

東日本大震災/「節電」利害調整難しく-産業界が自主計画(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx1520110419aaar.html

東日本大震災企業動向(化学工業日報)
http://www.kagakukogyonippo.com/headline/2011/04/19-1334.html
http://www.kagakukogyonippo.com/headline/2011/04/19-1335.html

☆Weblog
発明の日を再開発せねばな。(アマチュアサイエンティスト)
http://page-only-one.cocolog-nifty.com/imotora7/2011/04/post-87df.html

☆論文・総説
Lewis Acidity of Pt-Doped Buckybowls, Fullerenes, and Single-Walled Carbon Nanotubes (J. Phys. Chem. C)
http://pubs.acs.org/doi/abs/10.1021/jp108174b

2011/04/18

[GAMESS] 1,4-difluorobenzene (1,4-ジフルオロベンゼン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of 1,4-difluorobenzene (1,4-ジフルオロベンゼン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -5.8546646042 3.5311215084 0.2630780567
C 6.0 -6.7708803429 2.8433851926 1.0550425635
C 6.0 -7.1465819683 1.5479135898 0.7000495972
C 6.0 -5.3071212758 2.9479590637 -0.8770128752
C 6.0 -5.6830377546 1.6524904112 -1.2317099767
C 6.0 -6.5991931953 0.9646198188 -0.4399180098
F 9.0 -6.9599970439 -0.2791356192 -0.7806019254
H 1.0 -7.8587889574 0.9909181694 1.3006519429
H 1.0 -5.2706903382 1.1758328183 -2.1154393370
F 9.0 -5.4938130059 4.7750205623 0.6037929838
H 1.0 -7.1830952530 3.3199478140 1.9385269769
H 1.0 -4.5951076531 3.5048555154 -1.4774171056
$END
to here -----

Results of geometrical optimization...
HOMO (-6.48 eV):

1,4-difluorobenzene_homo.png

LUMO (-0.49 eV):

1,4-difluorobenzene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

第174回 遷移状態見つかる

ここからは芋づる式。

☆Done
DFT計算10ジョブ投入・8ジョブ解析、報告書作成、雑務。

☆レガシーメディア
東日本大震災/変圧器メーカー、電力インフラ復旧急ぐ(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0120110418baai.html

東日本大震災 企業動向(化学工業日報)
http://www.kagakukogyonippo.com/headline/2011/04/18-1310.html

☆Weblog
インク式電子回路(アマチュアサイエンティスト)
http://page-only-one.cocolog-nifty.com/imotora7/2011/04/post-b962.html

第1161回 何もなく終わったG20 今週の予定(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/63176963.html

☆論文・総説
Ln4(CH2)4 Cubane-Type Rare-Earth Methylidene Complexes Consisting of “(C5Me4SiMe3)LnCH2” Units (Ln = Tm, Lu) (J. Am. Chem. Soc.)
http://pubs.acs.org/doi/abs/10.1021/ja200540b

Speciation of organic-soluble europium(III) α1-Wells–Dawson complexes (J. Am. Chem. Soc.)
http://pubs.rsc.org/en/content/articlelanding/2011/dt/c0dt01309a

2011/04/15

[GAMESS] 1,2,3,5-tetrafluorobenzene (1,2,3,5-テトラフルオロベンゼン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of 1,2,3,5-tetrafluorobenzene (1,2,3,5-テトラフルオロベンゼン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -5.8592049290 3.5920164551 0.3101317707
C 6.0 -6.7723082530 2.8817954731 1.0827581378
C 6.0 -7.1561203181 1.5892092139 0.7407942404
C 6.0 -5.3256111818 2.9891269630 -0.8241095618
C 6.0 -5.6966983280 1.6982477942 -1.1823341964
C 6.0 -6.6106032647 1.0046976408 -0.3974299454
F 9.0 -7.2915951679 3.4532076558 2.1763175916
F 9.0 -5.1769464606 1.1263517529 -2.2768541651
F 9.0 -6.9762738329 -0.2401771220 -0.7322076950
F 9.0 -4.4455633286 3.6679940054 -1.5725507927
H 1.0 -7.8685137004 1.0462088194 1.3510382399
H 1.0 -5.5681624842 4.5986377480 0.5871886206
$END
to here -----

Results of geometrical optimization...
HOMO (-6.86 eV):

1,2,3,5-tetrafluorobenzene_homo.png

LUMO (-0.57 eV):

1,2,3,5-tetrafluorobenzene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

第173回 週末モード。夏の節電どうすべきか。

☆Done
DFT計算1ジョブ解析、7ジョブ投入、論文書き、雑務。

☆レガシーメディア
東大、量子操作使いシュレーディンガーの猫を実証(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720110415eaaf.html

東日本大震災 企業動向(化学工業日報)
http://www.kagakukogyonippo.com/headline/2011/04/15-1274.html
http://www.kagakukogyonippo.com/headline/2011/04/15-1276.html

☆Weblog
第1159回 PIGSのダイエット計画(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/63158347.html

桜餅の香り(有機化学美術館・分館)
http://blog.livedoor.jp/route408/archives/51804342.html

☆論文・総説
Functional Materials for Rechargeable Batteries
http://onlinelibrary.wiley.com/doi/10.1002/adma.201003587/abstract

第173回 週末モード。夏の節電どうすべきか。

☆Done
DFT計算1ジョブ解析、7ジョブ投入、論文書き、雑務。

☆レガシーメディア
東大、量子操作使いシュレーディンガーの猫を実証(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720110415eaaf.html

東日本大震災 企業動向(化学工業日報)
http://www.kagakukogyonippo.com/headline/2011/04/15-1274.html
http://www.kagakukogyonippo.com/headline/2011/04/15-1276.html

☆Weblog
第1159回 PIGSのダイエット計画(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/63158347.html

桜餅の香り(有機化学美術館・分館)
http://blog.livedoor.jp/route408/archives/51804342.html

☆論文・総説
Functional Materials for Rechargeable Batteries
http://onlinelibrary.wiley.com/doi/10.1002/adma.201003587/abstract

2011/04/14

[GAMESS] 1,2,3,4-tetrafluorobenzene (1,2,3,4-テトラフルオロベンゼン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of 1,2,3,4-tetrafluorobenzene (1,2,3,4-テトラフルオロベンゼン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -5.8709871279 3.5920275572 0.3262554339
C 6.0 -6.7881092161 2.9009987977 1.1172513889
C 6.0 -7.1636529822 1.6046119481 0.7614286244
C 6.0 -5.3280807349 3.0035678804 -0.8110458331
C 6.0 -5.7010391875 1.7148323669 -1.1652730261
C 6.0 -6.6153869951 1.0205648447 -0.3802441476
F 9.0 -5.5158269582 4.8357489318 0.6746361781
H 1.0 -7.2015111830 3.3772296655 2.0021369989
F 9.0 -5.1826829747 1.1402839048 -2.2596629791
F 9.0 -6.9807633482 -0.2242048949 -0.7153538970
F 9.0 -4.4472215262 3.6802355246 -1.5620720452
H 1.0 -7.8761843714 1.0465493718 1.3617589397
$END
to here -----

Results of geometrical optimization...
HOMO (-6.86 eV):

1,2,3,4-tetrafluorobenzene_homo.png

LUMO (-0.60 eV):

1,2,3,4-tetrafluorobenzene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

第172回 廃液申請システムと格闘

本年度より勤務先の廃液申請システムがバージョンアップ。まだ不具合やUIの不備があるようで。

☆Done
DFT計算3ジョブ投入・3ジョブ解析、論文書き、雑務。

☆レガシーメディア
タッチパネル研究所、抵抗膜方式タッチパネル検査機を開発(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0120110414babh.html

新日鉄、釜石製鉄所が稼働再開-主力設備が復旧(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0820110414aaau.html

東日本大震 災企業動向(化学工業日報)
http://www.kagakukogyonippo.com/headline/2011/04/14-1262.html

☆Weblog
第1158回 共倒れ(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/63152508.html

☆論文・総説
NHC/Iron cooperative catalysis: aerobic oxidative esterification of aldehydes with phenols (Org. Biomol. Chem.)
http://pubs.rsc.org/en/content/articlelanding/2011/ob/c1ob05151b

2011/04/13

[GAMESS] 1,2,4,5-tetrafluorobenzene (1,2,4,5-テトラフルオロベンゼン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of 1,2,4,5-tetrafluorobenzene (1,2,4,5-テトラフルオロベンゼン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -5.8499208886 3.5897528920 0.2959144370
C 6.0 -6.7628960456 2.8787947805 1.0678710865
C 6.0 -7.1379219006 1.5842422438 0.7125702043
C 6.0 -5.3189966953 2.9840315655 -0.8365747193
C 6.0 -5.6942524483 1.6883254148 -1.1923348849
C 6.0 -6.6063248741 0.9783565728 -0.4209495118
F 9.0 -7.2817132108 3.4519968522 2.1619885043
F 9.0 -5.1750605763 1.1158939458 -2.2864479872
F 9.0 -4.4386563529 3.6580836030 -1.5886455338
F 9.0 -8.0180268504 0.9098007089 1.4640577961
H 1.0 -6.8981766262 -0.0284638821 -0.6970329365
H 1.0 -5.5586277558 4.5961716069 0.5724925124
$END
to here -----

Results of geometrical optimization...
HOMO (-6.69 eV):

1,2,4,5-tetrafluorobenzene_homo.png

LUMO (-0.73 eV):

1,2,4,5-tetrafluorobenzene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

第171回 年度最初の検討会

☆Done
特殊検診、論文書き、研究室ゼミ(検討会)、雑務。

☆レガシーメディア
工作機械昨年度受注、3年ぶり1兆円台(日刊工業新聞) http://www.nikkan.co.jp/news/nkx0120110413babc.html

慶大、フラーレンで複合分子を作製-アルツハイマーの原因物質を光で狙い撃ち(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720110413aaaq.html

三菱化学、色や明るさを自在に変えられる有機EL照明パネル発売(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0820110413aaap.html

☆Weblog
第1157回 自己資本(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/63146988.html

東北新生プロジェクト(大学教授のぶっちゃけ話)
http://junjikido.cocolog-nifty.com/blog/2011/04/post-8ecf.html

シリコンの次は炭化ケイ素(アマチュアサイエンティスト)
http://page-only-one.cocolog-nifty.com/imotora7/2011/04/post-5cbd.html

☆論文・総説

2011/04/12

[GAMESS] allenylsilane (アレニルシラン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of allenylsilane (アレニルシラン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -11.8931948356 2.6206599838 0.1246693128
C 6.0 -10.7378374027 2.0300035027 0.1372363058
C 6.0 -9.5921931414 1.4213312998 0.1545094243
H 1.0 -9.5262488282 0.3661190007 0.3865509277
Si 14.0 -8.0515151456 2.3080199192 -0.2072220404
H 1.0 -11.9637468115 3.7021593323 0.1613576699
H 1.0 -12.8093943144 2.0428060629 0.0786203987
H 1.0 -8.2959048303 3.7374264671 -0.5316907689
H 1.0 -7.3606948359 1.6732814739 -1.3578850089
H 1.0 -7.1411760774 2.2388769741 0.9635341290
$END

to here -----

Results of geometrical optimization...
HOMO (-6.94 eV):

allenylsilane_homo.png

LUMO (+0.03 eV):

allenylsilane_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

第170回 ゆれくるコール鳴りまくり

昨日の夕方から大変お世話になっております、「ゆれくるコール」。

☆Done
DFT計算4ジョブ投入・3ジョブ解析、解析データまとめ、雑務。

☆レガシーメディア
東京理科大など、ポジトロニウムからの電子分離に成功(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720110412eaaf.html
http://www.kagakukogyonippo.com/headline/2011/04/12-1223.html

東日本大震災 企業動向(化学工業日報)
http://www.kagakukogyonippo.com/headline/2011/04/12-1223.html

☆Weblog
第1156回 貸し手の苦悩 借り手の苦悩(代表戸締役 ◆jJEom8Ii3Eの妄言
http://blogs.yahoo.co.jp/daitojimari/63141315.html

ポスドク募集中!(大学教授のぶっちゃけ話)
http://junjikido.cocolog-nifty.com/blog/2011/04/post-e7d7.html

☆論文・総説
Liquid−Liquid Biphasic Synthesis of Layered Zinc Hydroxides Intercalated with Long-Chain Carboxylate Ions and Their Conversion into ZnO Nanostructures (Inorg. Chem.)
http://pubs.acs.org/doi/abs/10.1021/ic1025729

2011/04/11

[GAMESS] 1-silacyclooct-2-ene (1-シラシクロオクト-2-エン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of 1-silacyclooct-2-ene (1-シラシクロオクト-2-エン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
Si 14.0 -4.3384344189 7.5789932539 5.8728455018
C 6.0 -6.8415127804 8.3016621725 7.1946921023
C 6.0 -5.6047911066 8.5618181413 6.7447503591
H 1.0 -5.2141044761 9.5572296032 6.9448109557
C 6.0 -5.0279387735 6.5590873508 4.4784679938
H 1.0 -3.6257276895 6.7044172143 6.8370576635
H 1.0 -3.3377427926 8.5261629594 5.3220872986
C 6.0 -7.7021149802 6.1530797949 5.9384477102
C 6.0 -6.5714265685 5.1260958285 6.0049674053
C 6.0 -5.5979272708 5.1801470227 4.8243720475
H 1.0 -4.7709495711 4.4902946525 5.0370863292
H 1.0 -6.0984845566 4.7833164811 3.9312646966
H 1.0 -7.0123421227 4.1204350235 6.0208718939
H 1.0 -6.0175262389 5.2086788968 6.9481312396
H 1.0 -4.2242700477 6.4050762182 3.7472290273
H 1.0 -5.7848187738 7.1493087292 3.9494842351
C 6.0 -7.7474234499 7.0985468256 7.1418093337
H 1.0 -7.6349969850 6.5333818716 8.0759648801
H 1.0 -8.7706472047 7.4992724126 7.1687048528
H 1.0 -7.3141444545 9.1306403090 7.7304722511
H 1.0 -8.6466894468 5.5923297922 5.9359246857
H 1.0 -7.7049224456 6.7224694264 5.0025870163
$END
to here -----

Results of geometrical optimization...
HOMO (-6.67 eV):

1-silacyclooct-2-ene_homo.png

LUMO (+0.22 eV):

1-silacyclooct-2-ene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

第169回 報告書作成

JST関連の報告書の作成。ガイド付なので楽に書ける印象。どれだけのボリュームで書けばいいのかは不明。

☆Done
DFT計算4ジョブ投入・7ジョブ解析、報告書作成、雑務。

☆レガシーメディア
分子研、分子1個で高速演算できる光技術を開発(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720110411eaat.html

金融界、一枚岩で節電対策(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx1520110411abbq.html

東日本大震災 主要樹脂フィルム 4月末には全工場が通常運転(化学工業日報)
http://www.kagakukogyonippo.com/headline/2011/04/11-1194.html

☆Weblog
ワープロ変換発明のお値段は、ハウマッチ!(アマチュアサイエンティスト)
http://page-only-one.cocolog-nifty.com/imotora7/2011/04/post-fb06.html

第1155回 変化の予兆(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/63134939.html

☆論文・総説
Direct Catalytic Enantio- and Diastereoselective Aldol Reaction of Thioamides (J. Am. Chem. Soc.)
http://pubs.acs.org/doi/abs/10.1021/ja200250p

Greener solvents for ruthenium and palladium-catalysed aromatic C–H bond functionalisation (Green Chem.)
http://pubs.rsc.org/en/content/articlelanding/2011/gc/c0gc00885k

2011/04/10

[GAMESS] 1-silacyclobut-2-ene (1-シラシクロブト-2-エン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of 1-silacyclobut-2-ene (1-シラシクロブト-2-エン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
Si 14.0 -4.2537523590 7.5721038512 5.5668826988
C 6.0 -6.4531401209 7.3697043468 6.4711930090
C 6.0 -5.5352350558 8.3544291473 6.6132614567
H 1.0 -5.5459463344 9.2925082114 7.1596507553
C 6.0 -5.6966697808 6.3882619985 5.5533256312
H 1.0 -5.4804988705 5.4075369149 5.9895582186
H 1.0 -6.1417067743 6.2297889030 4.5654770801
H 1.0 -3.0365915450 7.3166006484 6.3798931957
H 1.0 -3.9508928831 8.4537762496 4.4098763291
H 1.0 -7.4622174243 7.2824449317 6.8894156831
$END
to here -----

Results of geometrical optimization...
HOMO (-7.05 eV):

1-silacyclobut-2-ene_homo.png

LUMO (+0.19 eV):

1-silacyclobut-2-ene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2011/04/09

[GAMESS] 1-silacyclohex-2-ene (1-シラシクロヘキス-2-エン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of 1-silacyclohex-2-ene (1-シラシクロヘキス-2-エン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
Si 14.0 -4.2874647637 7.5403362832 5.9192214214
C 6.0 -6.9295481048 7.8384776981 6.8532030351
C 6.0 -5.6772280776 8.3261986535 6.8470650679
H 1.0 -5.4247543108 9.2365407573 7.3778394739
C 6.0 -5.1557681187 6.1574979310 4.9706991885
H 1.0 -3.3019856233 6.9775692528 6.8750301075
H 1.0 -3.6367411209 8.5024064724 4.9961879816
C 6.0 -7.4069702250 6.5864838176 6.1527191728
H 1.0 -7.6943694586 8.3888601331 7.4008256924
C 6.0 -6.3238228608 5.5597049200 5.7684805154
H 1.0 -5.9421853338 5.0849326905 6.6832290792
H 1.0 -6.7889325888 4.7619703868 5.1771354451
H 1.0 -8.1281127729 6.0834972509 6.8082506777
H 1.0 -7.9589851605 6.8880548804 5.2535469942
H 1.0 -5.5336368501 6.5612776067 4.0239811665
H 1.0 -4.4318052972 5.3734579125 4.7255116285
$END
to here -----

Results of geometrical optimization...
HOMO (-6.75 eV):

1-silacyclohex-2-ene_homo.png

LUMO (+0.19 eV):

1-silacyclohex-2-ene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2011/04/08

[GAMESS] 1-silacyclohept-2-ene (1-シラシクロヘプト-2-エン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of 1-silacyclohept-2-ene (1-シラシクロヘプト-2-エン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
Si 14.0 -4.2121695273 7.6114864767 5.8369660639
C 6.0 -6.8397401837 7.8373439633 6.9600121664
C 6.0 -5.5800977259 8.2933316964 6.8601303407
H 1.0 -5.2985112193 9.1975687233 7.3896739451
C 6.0 -5.0004566956 6.5553257554 4.5107649620
H 1.0 -3.2962745062 6.8000757957 6.6763349275
H 1.0 -3.4521401557 8.7283406614 5.2235739835
C 6.0 -7.4714494782 6.6123657946 6.3414906276
H 1.0 -7.5243023874 8.4216375201 7.5788485042
C 6.0 -6.5914558033 5.3634958623 6.2208244810
H 1.0 -8.3097201664 6.3408516589 6.9970982584
H 1.0 -7.9191246011 6.8744543167 5.3752399398
C 6.0 -5.6982936550 5.2750261555 4.9749875580
H 1.0 -4.9429591871 4.4997801798 5.1602151791
H 1.0 -6.3030709469 4.9022657981 4.1372896698
H 1.0 -7.2452709000 4.4815997789 6.2112221625
H 1.0 -5.9756810403 5.2552672218 7.1239518472
H 1.0 -4.2337090372 6.2832247984 3.7757208870
H 1.0 -5.7251725331 7.1756167511 3.9688516217
$END
to here -----

Results of geometrical optimization...
HOMO (-6.69 eV):

1-silacyclohept-2-ene_homo.png

LUMO (+0.14 eV):

1-silacyclohept-2-ene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

第168回 研究紹介

☆Done
DFT7ジョブ計算・8ジョブ解析、研究室ゼミ(研究紹介)、雑務。

☆レガシーメディア
東日本大震災/車各社、生産再開の動き広がる(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0420110408beal.html

理研・阪大、白色光でカラー再生できる3次元ホログラム開発(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720110408eaaf.html

東日本大震災 東日本の石化コンビナート 計画停電には自家発電活用で対応(化学工業日報)
http://www.kagakukogyonippo.com/headline/2011/04/08-1183.html

☆Weblog
第1153回 EU利上げとポルトガル救済(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/63118924.html

☆論文・総説
Limitations of the s(E+N) and Related Equations: Solvent Dependence of Electrophilicity (Angew. Chem. Int. Ed.)
http://onlinelibrary.wiley.com/doi/10.1002/anie.201005816/abstract

Revealing the nature of thio-click reactions on the solid phase (Chem. Commun.)
http://pubs.rsc.org/en/content/articlelanding/2011/cc/c0cc05340f

2011/04/07

[GAMESS] propargyltrimethylsilane (プロパルギルトリメチルシラン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of propargyltrimethylsilane (プロパルギルトリメチルシラン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -6.5569668091 1.7435467862 -0.0281058697
C 6.0 -5.4189723610 1.3596107960 -0.0341804337
C 6.0 -4.0307007246 0.8753003310 -0.0412822003
H 1.0 -3.8581191442 0.2378626111 0.8329619407
Si 14.0 -2.7391581815 2.2698762660 -0.0277786500
H 1.0 -3.8603261514 0.2568372814 -0.9295497259
H 1.0 -7.5671580943 2.0832021980 -0.0225393991
C 6.0 -2.9447845879 3.3175256728 1.5148781840
C 6.0 -2.9389144221 3.3416315254 -1.5545603730
C 6.0 -1.0230964634 1.5024987883 -0.0306272972
H 1.0 -0.8837287740 0.8685200079 0.8502478160
H 1.0 -0.2537310160 2.2797727577 -0.0200991405
H 1.0 -0.8783138091 0.8870023871 -0.9234016690
H 1.0 -3.9299883433 3.7929369466 1.5339089033
H 1.0 -2.1856889880 4.1042790194 1.5500721117
H 1.0 -2.8432567708 2.7034015118 2.4147277138
H 1.0 -3.9253753528 3.8148785131 -1.5713896893
H 1.0 -2.8310440480 2.7422525314 -2.4635223964
H 1.0 -2.1817471978 4.1306515880 -1.5729995359
$END
to here -----

Results of geometrical optimization...
HOMO (-6.42 eV):

propargyltrimethylsilane_homo.png

LUMO (+1.82 eV):

propargyltrimethylsilane_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

第167回 雑務多し

対応メールが多く届いた日。即日返信。

☆Done
DFT計算6ジョブ投入・6ジョブ解析、雑務。

☆レガシーメディア
日本ゼオン・帝人など、官民でレアメタル代替-インジウム使用量ゼロへ(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0820110407aaar.html

輪番操業、独禁法に違反せず-公取委総長(日刊工業新聞
http://www.nikkan.co.jp/news/nkx1520110407agbh.html

東日本大震災企業動向(化学工業日報)
http://www.kagakukogyonippo.com/headline/2011/04/07-1147.html

東日本大震災不織布 西日本で増産の動き(化学工業日報)
http://www.kagakukogyonippo.com/headline/2011/04/07-1145.html

☆Weblog
第1152回 ポルトガル逝く 欧州の連鎖リスク(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/63112094.html

将棋脳(アマチュアサイエンティスト)
http://page-only-one.cocolog-nifty.com/imotora7/2011/04/post-d9f9.html

ちょっと明るい話(大学教授のぶっちゃけ話)
http://junjikido.cocolog-nifty.com/blog/2011/04/post-e0eb.html

☆論文・総説

2011/04/06

[GAMESS] 1-silacyclopent-2-ene (1-シラシクロペント-2-エン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of 1-silacyclopent-2-ene (1-シラシクロペント-2-エン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
Si 14.0 -4.3402623204 7.5386027210 5.6622377269
C 6.0 -6.7032884295 7.6735322413 6.9018864019
C 6.0 -5.5837776940 8.3978761393 6.7396226871
H 1.0 -5.3899677985 9.3721947677 7.1616798809
C 6.0 -5.5884891088 6.1521248442 5.2506732215
H 1.0 -3.1916432426 7.0328873995 6.4543381934
H 1.0 -3.9689478309 8.3361462911 4.4671911655
C 6.0 -6.7678892411 6.3172477454 6.2382205768
H 1.0 -6.7248496264 5.5395238029 7.0106764051
H 1.0 -7.7180316537 6.1949141933 5.7067045550
H 1.0 -7.5333063039 8.0218375670 7.5097097430
H 1.0 -5.1337968768 5.1605502776 5.3328738666
H 1.0 -5.9398893243 6.2875078543 4.2217022350
$END
to here -----

Results of geometrical optimization...
HOMO (-6.80 eV):

1-silacyclopent-2-ene_homo.png

LUMO (+0.03 eV):



Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

第166回 IFCARTを使う

IFCART、GAMESSで座標を固定する原子を指定して構造最適化等を行うときに使用。

☆Done
DFT計算15ジョブ投入・17ジョブ解析、論文書き、雑務。

☆レガシーメディア
東日本大震災/日立化成、来月から鉄道用カーボンブラシの供給再開(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0320110406bjaw.html

筑波大、色が変わる薄膜型電極開発(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720110406eaag.html

東日本大震災 企業動向(化学工業日報)
http://www.kagakukogyonippo.com/headline/2011/04/06-1118.html

☆Weblog
第1151回 連鎖の環(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/63106624.html

Describing hydrogen bonds with DFT (Computational Organic Chemistry)
http://comporgchem.com/blog/?p=1448

2通のメール(大学教授のぶっちゃけ話)
http://junjikido.cocolog-nifty.com/blog/2011/04/post-7487.html

☆論文・総説
Enhancement of OFET performance of semiconducting polymers containing benzodithiophene upon surface treatment with organic silanesb (J. Polym. Sci. A)
http://onlinelibrary.wiley.com/doi/10.1002/pola.24663/abstract

New polyimides incorporated with diphenylpyrenylamine unit as fluorophore and redox-chromophore (J. Polym. Sci. A)
http://onlinelibrary.wiley.com/doi/10.1002/pola.24652/abstract

2011/04/05

[GAMESS] propargylsilane (プロパルギルシラン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of xx was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -6.4946331113 1.7455754729 -0.0213282131
C 6.0 -5.3501330576 1.3810620222 -0.0276935405
C 6.0 -3.9532821335 0.9159485411 -0.0357393713
H 1.0 -3.7865843536 0.2724486991 0.8365908583
Si 14.0 -2.6853488428 2.2821155205 -0.0247512411
H 1.0 -3.7901920023 0.2892063218 -0.9190539335
H 1.0 -7.5106412931 2.0681179399 -0.0153436052
H 1.0 -2.8180838841 3.1319636053 1.1883332974
H 1.0 -2.8107030497 3.1431021557 -1.2308428102
H 1.0 -1.3165906585 1.7012856693 -0.0232674722
$END
to here -----

Results of geometrical optimization...
HOMO (-6.78 eV):

propargylsilane_homo.png

LUMO (+0.08 eV):

propargylsilane_lumo.png

LUMO+1 (+1.52 eV):

propargylsilane_lumo1.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

第165回 防音工事

自宅での工事。二重窓にするだけかと思いきや、壁紙から総取っ替え。

☆Done
DFT計算2ジョブ投入・2ジョブ解析、論文書き、雑務。

☆レガシーメディア
首都圏の夏の電力不足、企業需要のシフトで対応-化学工学会が試算(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720110405eaai.html

東日本大震災/電力の“地産地消”を-電力供給体制見直し(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720110405eaab.html

東日本大震災 企業動向(化学工業日報)
http://www.kagakukogyonippo.com/headline/2011/04/05-1104.html
http://www.kagakukogyonippo.com/headline/2011/04/05-1103.html

☆Weblog
第1150 政権交代ドミノの予兆(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/63101149.html

退職願:つづき(大学教授のぶっちゃけ話)
http://junjikido.cocolog-nifty.com/blog/2011/04/post-9343.html

☆論文・総説
A Polymorphic Platinum(II) Complex: Yellow, Red, and Green Polymorphs and X-ray Crystallography of [Pt(fdpb)Cl] [Hfdpb = 1,3-Bis(5-trifluoromethyl-2-pyridyl)benzene] (Eur. J. Inorg. Chem.)
http://onlinelibrary.wiley.com/doi/10.1002/ejic.201001359/abstract

2011/04/04

[GAMESS] methylidenecycloheptane (メチリデンシクロヘプタン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of methylidenecycloheptane (メチリデンシクロヘプタン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -5.2757569546 4.2634226939 -0.2317947559
C 6.0 -6.6748350616 4.6793207565 0.1566789290
C 6.0 -4.8541851065 2.8487985792 0.0740930717
C 6.0 -4.4278669903 5.1318806114 -0.8096786092
H 1.0 -4.7201349272 6.1545323315 -1.0271230692
H 1.0 -3.4166882812 4.8448028856 -1.0837136744
C 6.0 -5.7577733501 1.7714451831 -0.5331081553
H 1.0 -4.8057638179 2.7225903847 1.1631389937
H 1.0 -3.8341945282 2.6752745657 -0.2933023498
C 6.0 -7.1241576075 1.6915242197 0.1439461437
H 1.0 -5.2558453651 0.8061249070 -0.3886271318
H 1.0 -5.8639589781 1.9082235241 -1.6158277211
C 6.0 -7.7254080356 4.0674629018 -0.7668523911
H 1.0 -6.7608181433 5.7718732649 0.0907978286
H 1.0 -6.8706142220 4.4273286937 1.2055798472
C 6.0 -8.1799949408 2.6578815394 -0.3900339131
H 1.0 -8.9747025591 2.7333559107 0.3636074476
H 1.0 -8.6555587976 2.2113606291 -1.2728401961
H 1.0 -7.3597289183 4.0648135172 -1.8021778925
H 1.0 -8.6133007693 4.7128303411 -0.7687458902
H 1.0 -7.0110811978 1.8350511955 1.2258587839
H 1.0 -7.5168905260 0.6738868430 0.0213071598
$END
to here -----

Results of geometrical optimization...
HOMO (-6.34 eV):

methylenecycloheptane_homo.png

LUMO (+0.87 eV):

methylenecycloheptane_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

第164回 2ステップか?

反応機構を探った結果、1ステップではなく2ステップのパスが浮上。謎はさらに深まる(笑

☆Done
DFT計算22ジョブ投入・21ジョブ解析、論文書き、新歓、雑務。

☆レガシーメディア
日本街路灯製造、LED照明のデザイン・製作で人材育成を支援(日刊工業新聞) http://www.nikkan.co.jp/news/nkx0620110404bbai.html

東日本大震災 包材メーカー 溶剤MEKひっ迫深刻 代替品採用の動き(化学工業日報) http://www.kagakukogyonippo.com/headline/2011/04/04-1096.html

東日本大震災 企業動向(化学工業日報)http://www.kagakukogyonippo.com/headline/2011/04/04-1075.html

☆Weblog
第1149回 今週の予定(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/63095563.html

エチレンの状況-2(化学業界の話題)
http://knak.cocolog-nifty.com/blog/2011/04/post-d066.html

日本のために(大学教授のぶっちゃけ話)
http://junjikido.cocolog-nifty.com/blog/2011/04/post-5790.html

☆論文・総説
Structural Interconversion and Regulation of Optical Properties of Stable Hypercoordinate Dipyrrin−Silicon Complexes (J. Am. Chem. Soc.)
http://pubs.acs.org/doi/abs/10.1021/ja2001924

Synthesis of glycerol carbonate from glycerol and urea with gold-based catalysts (Dalton Trans.)
http://pubs.rsc.org/en/content/articlelanding/2011/dt/c0dt01389g

Highly active and tunable catalysts for O2 evolution from water based on mononuclear ruthenium(II) monoaquo complexes (Dalton Trans.)
http://pubs.rsc.org/en/content/articlelanding/2011/dt/c0dt01826k

2011/04/03

[GAMESS] methylidenecyclobutane (メチリデンシクロブタン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of methylidenecyclobutane (メチリデンシクロブタン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -5.0341016072 4.0213948135 -0.2703387615
C 6.0 -6.5087497423 3.6780817396 -0.3004874593
C 6.0 -4.6446715615 2.7008381281 0.3603893904
C 6.0 -4.3371073405 5.0944790459 -0.6495552079
H 1.0 -4.8384583155 5.9513124855 -1.0858673145
H 1.0 -3.2601275958 5.1238769157 -0.5262984102
C 6.0 -6.0159147984 2.2221960591 -0.1615176334
H 1.0 -5.9593583331 1.6838917293 -1.1170362532
H 1.0 -6.5881242301 1.6041449357 0.5385459679
H 1.0 -4.5506365526 2.7081974177 1.4511134442
H 1.0 -3.7895889469 2.1707762175 -0.0693849552
H 1.0 -7.0539874958 3.8821369005 -1.2267215680
H 1.0 -7.0957038536 4.0424489615 0.5488028973
$END
to here -----

Results of geometrical optimization...
HOMO (-6.39 eV):

methylenecyclobutane_homo.png

LUMO (+0.65 eV):

methylenecyclobutane_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2011/04/01

[GAMESS] methylidenecyclopropane (メチリデンシクロプロパン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of methylidenecyclopropane (メチリデンシクロプロパン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -4.9606087373 4.1531884704 -0.3033779233
C 6.0 -6.2294855318 3.5472894731 -0.2496252599
C 6.0 -4.9105501053 2.8544837559 0.2361774798
H 1.0 -4.7426415994 2.7675086916 1.3004731244
H 1.0 -4.4843035313 2.0778558372 -0.3841352193
H 1.0 -6.6614798308 3.2214378303 -1.1860520269
H 1.0 -6.9196738500 3.9110207555 0.4986266309
C 6.0 -4.2758265364 5.2230472087 -0.6362417704
H 1.0 -4.7676956274 6.0888922840 -1.0660981588
H 1.0 -3.2024694924 5.2666672977 -0.4895570676
$END
to here -----

Results of geometrical optimization...
HOMO (-6.78 eV):

methylenecyclopropane_homo.png

LUMO (+0.52 eV):

methylenecyclopropane_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

第163回 新年度

年度始め。桜の開花が遅れているようで。

☆Done
DFT計算7ジョブ投入・5ジョブ解析、論文書き、雑務。

☆レガシーメディア
東日本大震災 企業動向(化学工業日報)
http://www.kagakukogyonippo.com/headline/2011/04/01-1062.html
http://www.kagakukogyonippo.com/headline/2011/04/01-1061.html
http://www.kagakukogyonippo.com/headline/2011/04/01-1060.html

東日本大震災 JX日鉱日石エネルギー・原油処理 4月は前年比19%減(化学工業日報)
http://www.kagakukogyonippo.com/headline/2011/04/01-1059.html

東日本大震災/トヨタ、11日以降に国内車両組立工場の一斉再開検討(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0420110401bear.html

東日本大震災/夏の電力対策、企業が自主行動計画-経団連特別委が緊急提言(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx1520110401abbd.html

☆Weblog
軌道電子の単離に成功(有機化学美術館・分館)
http://blog.livedoor.jp/route408/archives/51795895.html

普段の生活(大学教授のぶっちゃけ話)
http://junjikido.cocolog-nifty.com/blog/2011/03/post-0079-1.html

☆論文・総説
C–H Functionalization in organic synthesis (Chem. Soc. Rev.)
http://pubs.rsc.org/en/content/articlelanding/2011/cs/c1cs90010b

If C-H Bonds Could Talk: Selective C-H Bond Oxidation (Angew. Chem. Ent. Ed.)
http://onlinelibrary.wiley.com/doi/10.1002/anie.201006368/abstract

Microwave-assisted synthesis of nitrogen-containing 1-hydroxymethylenebisphosphonate drugs (Tetrahedron Lett.)
http://dx.doi.org/10.1016/j.tetlet.2011.02.058