2010/09/30

第54回 検印

保険証が新しくなる。
保険証?ほけんしょう?ほけんしょ?ほけんじょ?保健所?迷い始めるともうわからない。


☆Done
論文作成、その他雑務。


☆レガシーメディア
阪大、セマフォリン・プレキシンの結合前後の立体構造を解明(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720100930eaal.html
↑私自身は何もわかっていない。

NEDO、レアアースを使わないHV向けモーターを開発(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0820100930aaam.html


☆Weblog
第990回 生命維持装置(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/61792004.html

ChemPort 更新情報(気ままに有機化学)
http://chemistry4410.seesaa.net/article/164184353.html


☆論文・総説
Enantiopure 1,2-Bis(tert-butylmethylphosphino)benzene as a Highly Efficient Ligand in Rhodium-Catalyzed Asymmetric Hydrogenation
http://pubs.acs.org/doi/abs/10.1021/ol101936w
↑今本先生?

Palladium-Catalyzed [4 + 2] Cycloaddition of o-(Silylmethyl)benzyl Esters with Ketones: An Equivalent to Oxo-Diels-Alder Reaction of o-Xylylenes
http://pubs.acs.org/doi/abs/10.1021/ol101792a
↑桑野先生

Molybdenum-Mediated Carbonylation of Aryl Halides with Nucleophiles Using Microwave Irradiation
http://pubs.acs.org/doi/abs/10.1021/ol1016965

Phenylene Bridged Boron-Nitrogen Containing Dendrimers
http://pubs.acs.org/doi/abs/10.1021/ol101327h

[GAMESS] cyclopropanone (シクロプロパノン)

http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of cyclopropanone (シクロプロパノン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -5.8665561912 0.2703807075 0.3975972809
C 6.0 -5.9865524528 1.6729938496 0.4438626162
C 6.0 -4.6288155271 1.2978986775 0.4571318202
H 1.0 -6.1244464752 -0.1873257083 -0.5452879314
H 1.0 -6.0949945574 -0.3020730029 1.2857601566
H 1.0 -4.0760941278 1.3739862467 1.3832002034
H 1.0 -4.0785898217 1.5111634853 -0.4465628732
O 8.0 -6.7402471883 2.5653120084 0.7332216465
$END

to here -----

Results of geometrical optimization...
HOMO-2 (-10.04 eV):

cyclopropanone_homo-2.png

HOMO (-6.34 eV):

cyclopropanone_homo.png

LUMO (+0.82 eV):

cyclopropanone_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2010/09/29

[GAMESS] ethylene oxide (エチレンオキシド)

http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of ethylene oxide (エチレンオキシド) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -5.8159510790 0.2935016798 0.4089824304
O 8.0 -6.0166422776 1.7072382122 0.5339533042
C 6.0 -4.6594114941 1.2515837484 0.4642975177
H 1.0 -6.0619221030 -0.1634567587 -0.5409654103
H 1.0 -6.0215730356 -0.3185044754 1.2778458016
H 1.0 -4.0706785306 1.2974168423 1.3725122578
H 1.0 -4.1113173830 1.4523581473 -0.4463011664
$END
to here -----

Results of geometrical optimization...
HOMO (-7.28 eV):

ethylene_oxide_homo.png

LUMO (+2.97 eV):

ethylene_oxide_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

第53回 保険証を忘れずに

通勤は妻頼り。

☆Done
TDDFT4ジョブ投入、論文作成、その他雑務。


☆レガシーメディア
カネカ、東北デバイスから有機ELパネル事業取得(化学工業日報)
http://www.chemicaldaily.co.jp/news/201009/29/04601_2121.html

汎用石化製品、ナフサ下落で来月から値下げへ(化学工業日報)
http://www.chemicaldaily.co.jp/news/201009/29/01201_4435.html

レアアース、残り1カ月分に危機感-経産相(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0820100929abad.html

産総研チーム、ナノ炭素シート量産技術を開発(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0820100929aaaf.html

北大、近赤外光に対応した光電変換システムを開発(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720100929eaac.html

東京の鉄スクラップ、1カ月ぶり下落(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx1220100929ddad.html


☆Weblog
三井物産、インド医薬品中間体・原薬製造受託企業に資本参加(化学業界の話題)
http://knak.cocolog-nifty.com/blog/2010/09/post-578b.html

第889回 アイルランド危機(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/61783929.html


☆論文・総説
Organic functionalization of the surface of silica with arylsilanes. A new method for synthesizing organic–inorganic hybrid materials
http://dx.doi.org/10.1016/j.jorganchem.2010.08.023

Synthesis, photoluminescence, and electrochromism of polyamides containing (3,6-di-tert-butylcarbazol-9-yl)triphenylamine units
http://onlinelibrary.wiley.com/doi/10.1002/pola.24269/abstract

2010/09/28

[GAMESS] vinyl alcohol (ビニルアルコール)

http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of vinyl alcohol (ビニルアルコール) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -5.3911906003 0.2901003541 -0.0407178150
C 6.0 -4.1500645871 0.7767101476 -0.0698136729
O 8.0 -3.8390987620 2.0862886212 -0.2939014443
H 1.0 -4.6640314321 2.5847347796 -0.4245900439
H 1.0 -5.5589549221 -0.7660102727 0.1439931368
H 1.0 -6.2632218681 0.9150701778 -0.1967690237
H 1.0 -3.2605006861 0.1768049482 0.0825059654
$END
to here -----

Results of geometrical optimization...
HOMO-1 (-9.85 eV):

vinyl_alcohol_homo-1.png

HOMO (-6.12 eV):

vinyl_alcohol_homo.png

LUMO (+1.22 eV):

vinyl_alcohol_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

第52回 ギックリ腰

「ぎっくり腰で悶絶中。朝イチで廃棄物を梱包しているときにやらかした。廃棄物の重量は容器込みで1.5kg。中身を出そうと容器を床に打ち付けたときに。まともに歩けない。見たら笑え(笑」

☆Done
TDDFT2ジョブ投入、論文作成、科研費書類作成・提出、その他雑務、飲み会。


☆レガシーメディア
産総研、親知らずからiPS細胞-再生医療へ応用(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720100928eaac.html

関電、京大とマングローブのエタノール化で実験(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0820100928caao.html


☆Weblog
第988回 借り換え(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/61776392.html

文部科学省、「元気な日本復活特別枠」の熟議開始(科学政策ニュースクリップ)
http://d.hatena.ne.jp/scicom/20100927/p2

科学者と技術者(科学政策ニュースクリップ)
http://d.hatena.ne.jp/scicom/20100927/p1
↑わけられんようにならんとわやくそになるど

☆論文・総説
Transition-Metal-Free Homocoupling of 1-Haloalkynes: A Facile Synthesis of Symmetrical 1,3-Diynes
http://pubs.acs.org/doi/abs/10.1021/jo101216m

Highly Luminescent Poly(Methyl Methacrylate)-Incorporated Europium Complex Supported by a Carbazole-Based Fluorinated β-Diketonate Ligand and a 4,5-Bis(diphenylphosphino)-9,9-dimethylxanthene Oxide Co-Ligand
http://pubs.acs.org/doi/abs/10.1021/ic1015324

Para-Derivatized Pybox Ligands As Sensitizers in Highly Luminescent Ln(III) Complexes
http://pubs.acs.org/doi/abs/10.1021/ic101034y

Theoretical study of the mechanisms of [3+2] cycloaddition reactions of trimetallaallenes
http://pubs.rsc.org/en/Content/ArticleLanding/2010/DT/C0DT00112K

Application of the sila-Friedel–Crafts reaction to the synthesis of π-extended silole derivatives and their properties
http://pubs.rsc.org/en/Content/ArticleLanding/2010/DT/C0DT00136H

2010/09/27

[GAMESS] cyclooctene (シクロオクテン)

http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of cyclooctene (シクロオクテン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=200 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 1.4981953478 2.4060033017 0.0684807157
C 6.0 1.9159650818 1.1432703016 -0.6278694657
C 6.0 0.2853070894 2.9398476691 0.2724050785
H 1.0 2.3413545878 2.9598403703 0.4845477156
C 6.0 -1.6599792011 1.3873143600 0.6986455493
C 6.0 -1.0506659921 2.4578544766 -0.2036133931
H 1.0 0.2478390397 3.8697624914 0.8424081881
H 1.0 -1.0192146815 2.1455722869 -1.2520536633
H 1.0 -1.7180650505 3.3302276338 -0.1930912137
C 6.0 0.8717630287 0.0792797664 -0.9659327858
H 1.0 2.6769748547 0.6671706407 0.0053084854
H 1.0 2.4333658109 1.4279440134 -1.5526113856
C 6.0 -1.3707392489 -0.0520645194 0.2700141690
H 1.0 -2.7505238848 1.5133272148 0.6864565068
H 1.0 -1.3493146758 1.5322481105 1.7411523055
C 6.0 0.1041479967 -0.4525705177 0.2487783091
H 1.0 1.4167194407 -0.7646454034 -1.4110925233
H 1.0 0.1994294515 0.4288441698 -1.7557548709
H 1.0 0.5911277691 -0.1792246560 1.1918447309
H 1.0 0.1348086271 -1.5492531698 0.2010416237
H 1.0 -1.8226154704 -0.2425235202 -0.7113750293
H 1.0 -1.8900772586 -0.7144202466 0.9747532454
$END
to here -----

Results of geometrical optimization...
HOMO (-6.17 eV):

cyclooctene_homo.png

LUMO (+0.96 eV):

cyclooctene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

第51回 説明会の週

なんか慌ただしいぞ。うがー!

☆Done
TDDFT24ジョブ投入・2ジョブ解析、論文作成、予稿作成、その他雑務。


☆レガシーメディア
原子力機構など、磁性絶縁体から電気エネルギー(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720100927eaac.html

東ソー、リチウム電池用正極材料の副生物処理場を拡張(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0820100927cbae.html


☆Weblog
第987回 対中圧力 日銀 今週の予定(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/61766729.html

欧州委、テロ対策で化学物質規制へ(化学業界の話題)
http://knak.cocolog-nifty.com/blog/2010/09/post-62f8.html

☆論文・総説
N-Heterocyclic Carbene-Catalyzed Conjugate Additions of Alcohol
http://pubs.acs.org/doi/abs/10.1021/ja1061196

Rhodium-Catalyzed Asymmetric Arylation of N-Tosyl Ketimines
http://pubs.acs.org/doi/abs/10.1021/ja106114q

Nickel-Catalyzed Alkenylative Cross-Coupling Reaction of Alkyl Sulfides
http://pubs.acs.org/doi/abs/10.1021/ja104155f

A strong red-emitting carbazole based europium(III) complex excited by blue light
http://pubs.rsc.org/en/Content/ArticleLanding/2010/DT/C0DT00424C

Calcium-Catalyzed Hydroarylation of Alkenes at Room Temperature
http://onlinelibrary.wiley.com/doi/10.1002/chem.201001375/abstract

2010/09/26

[GAMESS] cycloheptene (シクロヘプテン)

http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of cycloheptene (シクロヘプテン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=200 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 1.4712391608 2.5190362217 0.0117803835
C 6.0 1.6694691184 1.1787560019 -0.6272940267
C 6.0 0.3012032596 3.1386106274 0.2207266340
H 1.0 2.3822213158 3.0405115647 0.3032292694
C 6.0 -1.3840463054 1.2258174756 0.3811853665
C 6.0 -1.0582400266 2.6229149872 -0.1403123545
H 1.0 0.3237951752 4.1303157964 0.6707308626
H 1.0 -1.1926781698 2.6734927908 -1.2277248729
H 1.0 -1.7946741475 3.3158513273 0.2867444956
C 6.0 0.8547068420 0.0404806552 -0.0185392761
H 1.0 2.7308398956 0.9197840264 -0.5212660571
H 1.0 1.4848065710 1.2558798302 -1.7057922077
C 6.0 -0.6382172785 0.0999078543 -0.3295912781
H 1.0 -2.4589579157 1.0569481412 0.2395161441
H 1.0 -1.2028295431 1.1714802795 1.4624657018
H 1.0 1.0101290119 -0.0001822979 1.0673570510
H 1.0 1.2433069503 -0.9032365716 -0.4215010201
H 1.0 -0.7947608064 0.1697436473 -1.4134496385
H 1.0 -1.0852087243 -0.8508821605 -0.0136391896
$END
to here -----

Results of geometrical optimization...
HOMO (-6.20 eV):

cycloheptene_homo.png

LUMO (+0.80 eV):

cycloheptene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2010/09/25

[GAMESS] cyclohexene (シクロヘキセン)

http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of cyclohexene (シクロヘキセン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=200 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 1.4814461110 2.4742039064 0.0662874410
C 6.0 1.4748915847 0.9765941534 -0.0350382195
C 6.0 0.3686262528 3.2190596759 -0.0103367561
H 1.0 2.4446056099 2.9592838889 0.2042641856
C 6.0 0.1479252607 0.4160367665 -0.5537803619
H 1.0 1.6898596907 0.5622272111 0.9568006853
H 1.0 2.2831153728 0.6529436250 -0.7010159821
C 6.0 -1.0029143243 2.6304712909 -0.1709936200
H 1.0 0.4414117828 4.3021176472 0.0486359267
C 6.0 -1.0427310777 1.1222619347 0.0892364095
H 1.0 0.0999173668 -0.6608022977 -0.3547725200
H 1.0 0.0978518908 0.5406352971 -1.6426826748
H 1.0 -1.0332486879 0.9362751954 1.1704709119
H 1.0 -1.9808045102 0.7064786499 -0.2963507405
H 1.0 -1.3519595558 2.8404327330 -1.1887010289
H 1.0 -1.6961352686 3.1291375354 0.5162230242
$END
to here -----

Results of geometrical optimization...
HOMO (-6.21 eV):

cyclohexene_homo.png

LUMO (+1.02 eV):

cyclohexene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2010/09/24

第49回 本日休業

自炊してます。衛生管理者のテキストとか、妻所有のコミックとか。

☆レガシーメディア
資生堂-栄研化学、局方指定特殊微生物の試験法を開発(化学工業日報
http://www.chemicaldaily.co.jp/news/201009/24/02801_2131.html

旭有機材、塩ビパイプ生産拠点を栃木工場に統合(化学工業日報)
http://www.chemicaldaily.co.jp/news/201009/24/01401_2125.html

昭和電工、シンガポールでHDを追加増強(化学工業日報)
http://www.chemicaldaily.co.jp/news/201009/24/04601_2125.html

東工大、プラズマ使い高効率で麻酔ガスを無害化する装置を開発(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720100924eaab.html

分子研など、「ゆらぎ」利用しレーザー波長ごとの現象変化を観測(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720100924eaai.html

☆Weblog
世界の将来はどうなるか(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/61741169.html

[GAMESS] cyclopentene (シクロペンテン)

http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of cyclopentene (シクロペンテン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=200 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 1.6807447822 2.3730380619 0.0635033289
C 6.0 1.3679299735 0.9293631581 -0.1474324374
C 6.0 0.5802254411 3.1307080800 0.0230291348
H 1.0 2.6841761092 2.7528593329 0.1996233873
C 6.0 -0.1528474146 0.8854392896 -0.0014202870
H 1.0 1.8542161381 0.2938027736 0.5985915752
H 1.0 1.6863370377 0.6131404389 -1.1458932437
C 6.0 -0.6453951347 2.3154688033 -0.2214772161
H 1.0 0.5710839801 4.2076511682 0.1219094411
H 1.0 -1.0039785897 2.4653309586 -1.2448359453
H 1.0 -1.4486910155 2.5677416583 0.4771193756
H 1.0 -0.4176781839 0.5548718778 1.0113328451
H 1.0 -0.6132832064 0.1793189203 -0.7003283071
$END
to here -----

Results of geometrical optimization...
HOMO (-6.20 eV):

cyclopentene_homo.png

LUMO (+1.01 eV):

cyclopentene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2010/09/23

第49回 昼はうまかっちゃん

手は休んでいてもCPUと生身のアタマは働いている。

☆レガシーメディア
イーアンドエフ、CNT練り込んだ高強度チタン合金を開発(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720100923aaaf.html

京大、手のひらサイズの超小型分析装置開発 (日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720100923eaak.html

鉄スクラップ、低迷続く (日刊工業新聞)
http://www.nikkan.co.jp/news/nkx1220100923ddaf.html

4―6月の海外設備投資、アジアがけん引し8.2%増(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx1520100923abag.html


☆Weblog
世界の将来はどうなるか(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/61732161.html

[GAMESS] cyclobutene (シクロブテン)

http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of cyclobutene (シクロブテン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=200 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 2.1539879468 2.3695218681 0.0653991399
C 6.0 0.6354559585 2.1402570892 -0.0677830643
C 6.0 2.2886655230 0.8657258673 -0.0169934481
H 1.0 2.4618603032 2.8286395221 1.0113874315
H 1.0 2.6004603662 2.9383113894 -0.7577827751
C 6.0 0.9629425409 0.6658579345 -0.1292579284
H 1.0 0.1894045451 2.5719067549 -0.9707606136
H 1.0 0.0499848464 2.4674956559 0.7987075878
H 1.0 0.3414513142 -0.2196184245 -0.2297153220
H 1.0 3.1497538246 0.2046653672 0.0087259870
$END
to here -----

Results of geometrical optimization...
HOMO (-6.51 eV):

cyclobutene_homo.png

LUMO (+0.81 eV):

cyclobutene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2010/09/22

第48回 文献調査

本日ゼミの日。日頃から文献調査を。

☆Done
ゼミ、その他雑務。


☆レガシーメディア
出光興産、アルファオレフィン誘導体自社生産へ(化学工業日報)
http://www.chemicaldaily.co.jp/news/201009/22/01201_2121.html

住ベ、フェノール樹脂ケミカルリサイクル事業化(化学工業日報)
http://www.chemicaldaily.co.jp/news/201009/22/01402_2121.html

東北大、22ナノLSI向け新たて型素子を開発(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720100922aaad.html

内外の金相場、NY金の最高値受け上伸(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx1220100922ddac.html


☆Weblog
第983回 FOMC(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/61723161.html

体細胞クローン技術実用化へ(アマチュアサイエンティスト)
http://page-only-one.cocolog-nifty.com/imotora7/2010/09/post-d8e1.html

☆論文・総説
Single-Step Synthesis of Secondary Phosphine Oxides
http://pubs.acs.org/doi/abs/10.1021/om100571w

Preparation and Reactivity of a Ruthenium Complex Bearing a 2,6-Bis(trimethylsilyl)benzenethiolate Ligand
http://pubs.acs.org/doi/abs/10.1021/om100689f

Ligand Electronic Effect on Reductive Elimination of Biphenyl from cis-[Pt(Ph)2(diphosphine)] Complexes Bearing Electron-Poor Diphosphine: Correlation Study between Experimental and Theoretical Results
http://pubs.acs.org/doi/abs/10.1021/om100073j

Reactivity of Aryldimesitylboranes under Suzuki-Miyaura Coupling Conditions
http://pubs.acs.org/doi/abs/10.1021/om1006903

[GAMESS] cyclopropene (シクロプロペン)

http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of cyclopropene (シクロプロペン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=200 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 2.0920679379 2.2470741208 -0.0028800605
C 6.0 0.8068553845 2.0421634239 -0.0043500042
C 6.0 1.6497962172 0.8883821739 -0.0696081978
H 1.0 1.7306159211 0.3882902881 -1.0225525552
H 1.0 1.7436746522 0.2931305889 0.8252127405
H 1.0 -0.1795271094 2.4338064092 0.0228175470
H 1.0 2.9076800626 2.9259707628 0.0263458480
$END
to here -----

Results of geometrical optimization...
two HOMOs (-6.36 eV):

cyclopropene_homo.png

LUMO (+0.47 eV):

cyclopropene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2010/09/21

第47回 秋風はまだか?

休日中にキャンパス内で一時停電があった模様。DFT計算が途中でストップしてました orz

☆Done
TDDFT11ジョブ投入・6ジョブ解析、論文作成、ゼミのレジュメチェック、その他雑務。


☆レガシーメディア
京大、善玉コレステロールを減らすマイクロRNAを特定(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720100921eaah.html

アキレス、米子会社に無延伸PPフィルムの新設備(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0820100921cbak.html

商工中金、中小向け成長戦略融資が2カ月半で200億円(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx1220100921aaaf.html

米景気後退昨年6月終了、オバマ大統領は「まだ現実」(SankeiBiz)
http://www.sankeibiz.jp/macro/news/100921/mca1009210801002-n1.htm

中国、「隠し所得」120兆円 GDP比3割、富裕層8割握る(SankeiBiz)
http://www.sankeibiz.jp/macro/news/100921/mcb1009210501002-n1.htm


☆Weblog
メキシコ湾原油流出事故ーBottom Kill 作業完了(化学業界の話題)
http://knak.cocolog-nifty.com/blog/2010/09/bottom-kill-eeb.html

第982回 見せかけ(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/61715093.html

☆論文・総説
Impact of Forming and Modification with Phosphoric Acid on the Acid Sites of HZSM-5
http://pubs.acs.org/doi/abs/10.1021/jp106621d

A DFT study on the self-coupling reactions of the three isomeric semiquinone radicals
http://dx.doi.org/10.1016/j.theochem.2010.07.036

Solution-Processed Solid Solution of a Novel Carbazole Derivative for High-Performance Blue Phosphorescent Organic Light-Emitting Diodes
http://onlinelibrary.wiley.com/doi/10.1002/adma.201001392/abstract

Trifluoromethyl-Substituted Conjugated Oligoelectrolytes
http://onlinelibrary.wiley.com/doi/10.1002/chem.201000885/abstract

[GAMESS] cyclopropane (シクロプロパン)

http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of cyclopropane (シクロプロパン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=200 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 2.1623098695 2.3540673861 0.0388349305
C 6.0 0.6797404874 2.1272372281 -0.0527748500
C 6.0 1.6208911864 0.9558993344 -0.0604032218
H 1.0 1.7606168536 0.4217402074 -0.9932320683
H 1.0 1.6616182941 0.3304300395 0.8233613260
H 1.0 0.1822823082 2.3861033495 -0.9804043893
H 1.0 0.0833660945 2.2946852888 0.8361880708
H 1.0 2.5695677082 2.6750780054 0.9910020830
H 1.0 2.6684315428 2.7663707796 -0.8255994138
$END
to here -----

Results of geometrical optimization...
two HOMOs (-7.73 eV):

cyclopropane_homo_1.png

cyclopropane_homo_2.png

LUMO (+2.97 eV):

cyclopropane_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2010/09/20

第46回 停電してたようで

工事の関係で一時停電していたようで、TDDFT計算がストップしてました。途中までの計算が無駄にならないように慎重に処理して計算を再開。

☆レガシーメディア
フジクラ、燃料電池参入(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0820100920aaaj.html

物材機構・ローマ大、SOFCの電解質を結晶粒界ない膜に作製(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0820100920eaab.html

フジクラ、燃料電池参入(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0820100920aaaj.html

[GAMESS] isobutene (イソブテン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of isobutene (イソブテン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -2.0937224204 1.7124246367 0.2170390823
C 6.0 -0.8981937283 1.2540891677 -0.1858451430
C 6.0 -2.3857239769 3.1801895292 0.3361807814
H 1.0 -3.2167000960 3.4566394271 -0.3208004877
H 1.0 -1.5226872927 3.7952689102 0.0598148833
H 1.0 -2.6579782105 3.4308286334 1.3665340774
C 6.0 -3.2210574944 0.7878330835 0.5761884542
H 1.0 -2.9405367625 -0.2650080866 0.4671938871
H 1.0 -4.0842414517 0.9722299579 -0.0715425873
H 1.0 -3.5255114974 0.9464175812 1.6158051966
H 1.0 -0.0879134149 1.9300456063 -0.4438120204
H 1.0 -0.6952997472 0.1909724802 -0.2692910662
$END
to here -----

Results of geometrical optimization...
three HOMOs (-6.42 eV)。

isobutene_homo.png

LUMO (+0.93 eV)。

isobutene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2010/09/19

[GAMESS] trans-2-butene (trans-2-ブテン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of trans-2-butene (trans-2-ブテン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -2.1915558529 1.6380085885 0.2464806151
C 6.0 -1.0107961238 1.1380130203 -0.1480575632
C 6.0 -0.7207655797 -0.3232075285 -0.2662289018
H 1.0 -0.4395089991 -0.5648037552 -1.2957563758
H 1.0 -1.5828121260 -0.9400172422 0.0060945814
H 1.0 0.1123740618 -0.5916319492 0.3904498730
H 1.0 -0.1958388661 1.8113098054 -0.4041878835
C 6.0 -2.4815886202 3.0992292450 0.3646451637
H 1.0 -3.3148773638 3.3676036484 -0.2918652073
H 1.0 -1.6196166610 3.7160425768 0.0920938737
H 1.0 -2.7626249189 3.3408720363 1.3942216340
H 1.0 -3.0065104706 0.9647116753 0.5026189985
$END
to here -----

Results of geometrical optimization...
three HOMOs (-6.31 eV)。

trans-2-butene_homo.png

LUMO (+1.09 eV)。

trans-2-butene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2010/09/18

[GAMESS] cis-2-butene (cis-2-ブテン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of cis-2-butene (cis-2-ブテン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -3.6513678067 1.0653120347 0.1123917210
C 6.0 -2.3340928445 1.7708445333 0.1391469864
H 1.0 -4.2753791237 1.4823274979 -0.6843915383
H 1.0 -4.1695363266 1.2168361109 1.0645139592
H 1.0 -3.5674180936 -0.0096547924 -0.0571095762
C 6.0 -1.1105370042 1.2369963214 -0.0013256951
C 6.0 -0.7539463410 -0.1978586323 -0.2163332205
H 1.0 -0.2163636033 -0.3060361882 -1.1635142990
H 1.0 -1.6192784215 -0.8632432432 -0.2434397090
H 1.0 -0.0954909859 -0.5378715346 0.5891650722
H 1.0 -0.2581321013 1.9147989381 0.0449117253
H 1.0 -2.3987313094 2.8476732481 0.2910823789
$END
to here -----

Results of geometrical optimization...
three HOMOs (-6.29 eV)。

cis-2-butene_homo.png

LUMO (+1.09 eV)。

cis-2-butene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2010/09/17

第45回 科研費申請書下書きできた

とりあえずひとつ。ふだんから細々と日本語を書いていたのが良かったようで。もうひとつ書くかどうかは未定。当たる確率低そうだが来年の申請を見越して準備した方がいいかもと思ったりしている。

TDDFT。はよ終わってくれ、区切りがつかん。

18日に向けてセキュリティ対策。

☆Done
TDDFT46ジョブ投入・7ジョブ解析、論文作成、科研費申請書類作成、試読本返送、その他雑務。


☆レガシーメディア
三井化学、大阪でIPAをS&B・アセトン原料に転換(化学工業日報)
http://www.chemicaldaily.co.jp/news/201009/17/01201_2121.html

TDK、磁性シート新製品を10月から国内生産開始(化学工業日報)
http://www.chemicaldaily.co.jp/news/201009/17/04601_2131.html

名大、CNTから欠陥のない部分を取り出す技術開発(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720100917aaaa.html

東京理科大、事業創出へ軸足(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720100917ecab.html

特許庁、異分野連携の知財支援で専門人材を派遣(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx1520100917aaaf.html


☆Weblog
第979回 罪悪(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/61681243.html

[発声練習] 科学・技術政策で神経衰弱をやろう(発声練習)
http://d.hatena.ne.jp/next49/20100916/p2

県の9月補正予算(大学教授のぶっちゃけ話)
http://junjikido.cocolog-nifty.com/blog/2010/09/post-635c.html

ダイアモンドパワー(アマチュアサイエンティスト)
http://page-only-one.cocolog-nifty.com/imotora7/2010/09/post-1342.html

☆論文・総説
Pd-Catalyzed Oxidative Cross-Coupling of Perfluoroarenes with Aromatic Heterocycles
http://pubs.acs.org/doi/abs/10.1021/ja106046p

Synthesis and Characterization of an Iron(IV) Ketimide Complex
http://pubs.acs.org/doi/abs/10.1021/ja104934n

Molecular [Yb(TM)2] Intermetalloids (TM=Ru, Re)
http://onlinelibrary.wiley.com/doi/10.1002/chem.201001310/abstract

[GAMESS] 1-butene (1-ブテン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of 1-butene (1-ブテン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -2.9290150231 1.1555955374 -0.0049984787
C 6.0 -1.7051963988 1.6799546392 -0.1459664354
C 6.0 -0.4397189426 0.8725843015 -0.1459686028
H 1.0 -0.6580068212 -0.1991431054 -0.0765253299
C 6.0 0.4745446930 1.2728729725 1.0014716818
H 1.0 0.0793597895 1.0324940730 -1.0979896779
H 1.0 -3.8098079270 1.7911874752 -0.0182311891
H 1.0 -3.0826672909 0.0895241406 0.1266354424
H 1.0 -1.6040393737 2.7548244668 -0.2801091255
H 1.0 -0.0087417283 1.1035846281 1.9697617410
H 1.0 0.7512497403 2.3306179387 0.9385852879
H 1.0 1.3952878891 0.6811449050 0.9748846028
$END
to here -----

Results of geometrical optimization...
three HOMOs (-6.69 eV)。

1-butene_homo.png

LUMO (+0.79 eV)。

1-butene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2010/09/16

第44回 原料合成done

ルーチンでひとまとめにやると速いねぇ。

☆Done
TDDFT12ジョブ投入・12ジョブ解析、原料合成、論文作成、その他雑務。


☆レガシーメディア
豊田通商、ナノバルーンシリカを事業化へ(化学工業日報)
http://www.chemicaldaily.co.jp/news/201009/16/02201_2121.html

オルガノ、ベトナム現法が始動・水処理装置を拡販(化学工業日報)
http://www.chemicaldaily.co.jp/news/201009/16/03301_2121.html

日産化学、機能性シリカゾルの生産体制を強化(化学工業日報)
http://www.chemicaldaily.co.jp/news/201009/16/01601_2121.html

エフピコ、食品容器リサイクル工場を高度化(化学工業日報)
http://www.chemicaldaily.co.jp/news/201009/16/01401_2138.html

東レ、耐熱性と成形性両立の加飾PETフィルム開発(化学工業日報)
http://www.chemicaldaily.co.jp/news/201009/16/01201_2131.html

阪大など、ヒトの歯肉からiPS細胞を作製(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720100916eaad.html

名大、ミツバチが持つ温度・忌避物質を感知するたんぱく質特定(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720100916eaag.html

政府・日銀、円高阻止へ行動とる-6年半ぶり介入(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx1220100916abag.html


☆Weblog
第978回 日銀介入(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/61673867.html

Apollo Management傘下のMomentive Performance Materials とHexionが合併(化学業界の話題)
http://knak.cocolog-nifty.com/blog/2010/09/apollo-manageme.html


☆論文・総説
Regioselective Synthesis of 1-Bromo-1,4-dienes by Free-Radical-Mediated Bromoallylation of Activated Acetylenes
http://pubs.acs.org/doi/abs/10.1021/ol1016096
↑Ryu先生

Room-Temperature Alternative to the Arbuzov Reaction: The Reductive Deoxygenation of Acyl Phosphonates
http://pubs.acs.org/doi/abs/10.1021/ol1015493

[GAMESS] propene (プロペン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of propene (プロペン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -2.8348098790 1.1628698698 0.0309690331
C 6.0 -1.6099627876 1.6993131051 -0.0328656337
C 6.0 -0.3451056546 0.9056243428 -0.0119550636
H 1.0 -0.5318635199 -0.1664478691 0.1061362899
H 1.0 0.2873142624 1.2344289362 0.8183486470
H 1.0 0.2056520635 1.0569405417 -0.9452683896
H 1.0 -3.7186198570 1.7931568044 0.0119275529
H 1.0 -2.9856962450 0.0901464947 0.1011799972
H 1.0 -1.5078307967 2.7799069511 -0.1041324435
$END
to here -----

Results of geometrical optimization...
three HOMOs (-6.69 eV)。

propene_homo.png

LUMO (+0.87 eV)。

propene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2010/09/15

第43回 ええかげんにやってもうまくいく

実験というのはおさえるべきところをちゃんとおさえていれば、他のところがいい加減でもうまくいくもんです、はい。

☆Done
TDDFT12ジョブ解析、原料合成、その他雑務。


☆レガシーメディア
三菱レイヨン、環境・電子・光学分野などで新規事業推進(化学工業日報)
http://www.chemicaldaily.co.jp/news/201009/15/01201_2121.html

住化分析センター、化学品コンサル業務を拡大(化学工業日報)
http://www.chemicaldaily.co.jp/news/201009/15/04101_2121.html

東セロ、世界初の2軸延伸PEフィルム開発(化学工業日報)
http://www.chemicaldaily.co.jp/news/201009/15/01401_2131.html

東大と大日印、機能性シート開発-「近接場光」で光を変調(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720100915eaac.html

ニッケルの国際価格、4カ月ぶりに2万3000ドル突破(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx1220100915ddaa.html

特許庁、来年度から大学の知財を広域管理するアドバイザー制度を開始(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx1520100915abaj.html


☆Weblog
中国の特許熱ねえ。。。(アマチュアサイエンティスト)
http://page-only-one.cocolog-nifty.com/imotora7/2010/09/post-ad88.html

第977回 菅総理再選(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/61665564.html

[GAMESS] ethane (エタン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of ethane (エタン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=20 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -2.8329995298 1.2147485851 -0.0214875975
C 6.0 -1.3215579537 1.2078677353 0.0211475632
H 1.0 -3.2132546813 2.2398997403 -0.0273500696
H 1.0 -3.2443321118 0.6992394434 0.8517425837
H 1.0 -3.1940506180 0.7078994863 -0.9219148179
H 1.0 -0.9605067659 1.7147217695 0.9215719689
H 1.0 -0.9102253102 1.7233719697 -0.8520854816
H 1.0 -0.9413029631 0.1827165520 0.0270157134
$END

to here -----

Results of geometrical optimization...
two HOMOs (-9.14 eV)。

ethane_homo-1.png

ethane_homo-2.png

LUMO (+2.94 eV)。

ethane_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2010/09/14

第42回 11の倍数

ジョブ投入・解析共に11の倍数。理由があるのです。

☆Done
TDDFT44ジョブ投入・33ジョブ解析、修論打ち合わせ、原料合成、論文作成、科研費申請書類作成、その他雑務。


☆レガシーメディア
チッソ、リチウム正極材市場参入(SankeiBiz)
http://www.sankeibiz.jp/business/news/100914/bsc1009140504012-n1.htm

経産省、グリーン熱証書の普及拡大へ(化学工業日報)
http://www.chemicaldaily.co.jp/news/201009/14/04101_4138.html

三菱電機、有機EL使用の大型映像表示装置を発売(化学工業日報)
http://www.chemicaldaily.co.jp/news/201009/14/04602_2131.html

筑波大など、ナノ粒子で活性酸素除去-脳・心筋梗塞を予防(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720100914aaag.html

名大、次世代材料グラフェンを高速で大量生成できる技術開発(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720100914eaac.html

ドイツ外務省など、「科学・イノベーションフォーラム」を世界5カ国に設立(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720100914ecaa.html

政府、規制改革の検討加速-有望100項目で行程明示(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx1520100914abac.html


☆Weblog
第976回 二番底懸念と新BIS規制(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/61656395.html

三週間に三出張(ばくいんぶろぐ)
http://baku-san.blog.ocn.ne.jp/baku_in_blog/2010/09/post_9e6c.html

村井 眞二 Shinji Murai(世界の化学者データベース World chemistsDB)
http://www.chem-station.com/chemist-db/archives/2010/09/-shinji-murai.php


☆論文・総説
Detection of Volatile Organic Compounds Using Porphyrin Derivatives
http://pubs.acs.org/doi/abs/10.1021/jp102755h

Combined Solid-State NMR and Theoretical Calculation Studies of Brønsted Acid Properties in Anhydrous 12-Molybdophosphoric Acid
http://pubs.acs.org/doi/abs/10.1021/jp105683y

Low-Valent Iron-Catalyzed C−C Bond Formation−Addition, Substitution, and C−H Bond Activation
http://pubs.acs.org/doi/abs/10.1021/jo100693m

Mixed d−f3 Coordination Complexes Possessing Improved Near-Infrared (NIR) Lanthanide Luminescent Properties in Aqueous Solution
http://pubs.acs.org/doi/abs/10.1021/ic1010852

Monomeric Square-Planar Cobalt(II) Acetylacetonate: Mystery or Mistake?
http://pubs.acs.org/doi/abs/10.1021/ic100963r

[GAMESS] methane (メタン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of methane (メタン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=20 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -2.6221379071 1.2140535143 -0.0054098538
H 1.0 -1.5294665599 1.2147357879 0.0041993020
H 1.0 -2.9862359583 2.2442786099 0.0041993020
H 1.0 -2.9929803107 0.6893236501 0.8783559493
H 1.0 -2.9783329297 0.7100492148 -0.9047186052
$END
to here -----

Results of geometrical optimization...
three HOMOs (-10.50 eV)。

methane_homo-1.png

methane_homo-2.png

methane_homo-3.png

LUMO (+3.30 eV)。

methane_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2010/09/13

第41回 ドロドロで怖いよぅ

私にはドロドロしたものは似合いませぬ。シンプルな方がいいです、はい。

☆Done
TDDFT33ジョブ投入・7ジョブ解析、修論打ち合わせ、その他雑務。


☆レガシーメディア
インドネシア、日系化学・関連企業の投資が回復(化学工業日報)
http://www.chemicaldaily.co.jp/news/201009/13/02501_6161.html

経産・環境省、小型家電のレアメタル回収システム検討(化学工業日報)
http://www.chemicaldaily.co.jp/news/201009/13/04101_4138.html

振興銀、カット対象は110億円 営業再開、預金払い戻しへ(SankeiBiz)
http://www.sankeibiz.jp/business/news/100913/bse1009130803001-n1.htm


☆Weblog
世界の将来はどうなるか(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/61648434.html

三菱化学、リチウムイオン二次電池用負極材の製造能力増強(化学業界の話題)
http://knak.cocolog-nifty.com/blog/2010/09/post-dc1a.html

日本の生命線・希少元素を置き換える(有機化学美術館・分館)
http://blog.livedoor.jp/route408/archives/51599787.html


☆論文・総説
Luminescent phosphonium polyelectrolyte prepared from a diphosphine chromophore: synthesis, photophysics, and layer-by-layer assembly
http://pubs.rsc.org/en/Content/ArticleLanding/2010/JM/C0JM01430C

Synthesis and Photophysical Properties of Donor–Acceptor Dithienophospholes
http://onlinelibrary.wiley.com/doi/10.1002/ejoc.201000574/abstract

Catalytic C−O Bond Cleavage of 2-Aryloxy-1-arylethanols and Its Application to the Depolymerization of Lignin-Related Polymers
http://pubs.acs.org/doi/abs/10.1021/ja106101f

Chromophoric Lewis Base Adducts of Methyltrioxorhenium: Synthesis, Catalysis and Photochemistry
http://onlinelibrary.wiley.com/doi/10.1002/ejic.201000348/abstract

Unprecedented H-atom transfer from water to ketyl radicals mediated by Cp2TiCl
http://pubs.rsc.org/en/Content/ArticleLanding/2010/DT/C001689F

Novel heterobimetallic thiocarboxylato complexes: synthesis, characterization and application as single source precursor for ternary chalcogenides
http://pubs.rsc.org/en/Content/ArticleLanding/2010/DT/C0DT00210K

Speciation of chloroindate(III) ionic liquids
http://pubs.rsc.org/en/Content/ArticleLanding/2010/DT/C0DT00497A

Correlating Pt–P bond lengths and Pt–P coupling constants
http://pubs.rsc.org/en/Content/ArticleLanding/2010/DT/C003256E

[GAMESS] pyrimidine (ピリミジン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of pypyrimidine (ピリミジン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=50 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
N 7.0 -1.8043604554 2.3813256532 0.0038537307
C 6.0 -2.9085397785 1.6181321209 0.0017934468
N 7.0 -2.9413749898 0.2760015431 0.0012651689
C 6.0 -1.7419346358 -0.3354574306 0.0029933402
C 6.0 -0.5438476205 0.3410860129 0.0051752026
C 6.0 -0.6354892043 1.7139597620 0.0055125536
H 1.0 -3.8625927239 2.1331722568 0.0004289833
H 1.0 0.4069454184 -0.1723765733 0.0065349393
H 1.0 0.2544251017 2.3364446261 0.0071756563
H 1.0 -1.7745111627 -1.4207430903 0.0025563913
$END
to here -----

Results of geometrical optimization...
HOMO-1 (-7.78 eV)。

pyrimidine_homo-1.png

HOMO (-6.83 eV)

pyrimidine_homo.png

LUMO (-1.06 eV)

pyrimidine_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2010/09/12

すいしん たい乃家

「す」が隠れてますが…

日本経済新聞の「私の履歴書」が掲載されている面に時々掲載される広告の酒、「酔心」のメーカーのフラッグシップ店。東京駅の地下にある。地元の酒。

都心で出会える地元の物といえば、八点堂のクリームパンとここでしょうか。

写真.jpg

[GAMESS] pyrazine (ピラジン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of pyrazine (ピラジン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=50 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
N 7.0 -1.8115390257 2.4164912803 0.0038545392
C 6.0 -2.9290395539 1.6547201293 0.0017731618
C 6.0 -2.8842846273 0.2701015351 0.0013556386
N 7.0 -1.7195831999 -0.4176679812 0.0030004793
C 6.0 -0.6015120465 0.3443052912 0.0050828534
C 6.0 -0.6465974665 1.7286361122 0.0054997390
H 1.0 -3.8709687324 2.1911952609 0.0004359408
H 1.0 -3.7892186175 -0.3262568804 -0.0003225674
H 1.0 0.3400047282 -0.1922641081 0.0064193724
H 1.0 0.2583953714 2.3251537719 0.0071780968
$END
to here -----

Results of geometrical optimization...
HOMO-1 (-7.48 eV)

pyrazine_homo-1.png

HOMO (-6.75 eV)。

pyrazine_homo.png

LUMO (-1.33 eV)。

pyrazine_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2010/09/11

[GAMESS] pyridazine (ピリダジン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of pyridazine (ピリダジン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=50 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
N 7.0 -1.8043604554 2.3813256532 0.0038537307
N 7.0 -2.9085397785 1.6181321209 0.0017934468
C 6.0 -2.9413749898 0.2760015431 0.0012651689
C 6.0 -1.7419346358 -0.3354574306 0.0029933402
C 6.0 -0.5438476205 0.3410860129 0.0051752026
C 6.0 -0.6354892043 1.7139597620 0.0055125536
H 1.0 0.4069454184 -0.1723765733 0.0065349393
H 1.0 0.2544251017 2.3364446261 0.0071756563
H 1.0 -1.7745111627 -1.4207430903 0.0025563913
H 1.0 -3.8278817584 -0.2523232727 -0.0003590816
$END
to here -----

Results of geometrical optimization...
HOMO-1 (-7.92 ev)

pyridazine_homo-1.png

HOMO (-6.29 eV)。

pyridazine_homo.png

LUMO (-1.31 eV)。

pyridazine_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/