2010/10/31

[GAMESS] 2-methylpropanal (2-メチルプロパナール)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of 2-methylpropanal (2-メチルプロパナール) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -4.9380289918 3.2971823007 0.1250875561
C 6.0 -3.8240614523 2.2782125507 0.3307894418
H 1.0 -4.6190603527 4.2945379329 0.4466332455
H 1.0 -5.8270679302 3.0257055329 0.7043301371
H 1.0 -5.2259742179 3.3665584237 -0.9296898207
C 6.0 -4.2735543947 0.8831407959 -0.0878274134
H 1.0 -5.1535789262 0.5682282489 0.4832295268
H 1.0 -3.4798165588 0.1481283439 0.0837674190
H 1.0 -4.5264818909 0.8501964687 -1.1533049884
C 6.0 -2.5732785602 2.6493052066 -0.4434079125
H 1.0 -3.5456929211 2.2605949430 1.3907256638
O 8.0 -2.4177735304 3.7031322458 -1.0521141417
H 1.0 -1.7492396745 1.9170230661 -0.3855494929
$END
to here -----

Results of geometrical optimization...
HOMO-4 (-10.01 eV):

2-methylpropanal_homo-4.png

HOMO (-6.72 eV):

2-methylpropanal_homo.png

LUMO (-0.49 eV):

2-methylpropanal_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2010/10/30

[GAMESS] 2-methylbutanal (2-メチルブタナール)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of 2-methylbutanal (2-メチルブタナール) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -3.6151845304 0.7564120730 0.0838793104
C 6.0 -2.2444888203 1.3701941487 -0.1612296818
H 1.0 -4.3995331193 1.4574717548 -0.2197655611
H 1.0 -3.7593301905 0.5250878714 1.1434660274
H 1.0 -3.7525315199 -0.1620202466 -0.4947419049
C 6.0 -1.0865239518 0.5116878673 0.3665622734
H 1.0 -2.2172043521 2.3529271600 0.3273852235
H 1.0 -2.1190538152 1.5567468315 -1.2346160093
C 6.0 0.2435728460 1.2300612266 0.2136371969
C 6.0 -0.9842526310 -0.8416097045 -0.3321538543
H 1.0 -0.8962410669 -0.7207246768 -1.4172341037
H 1.0 -1.8592036112 -1.4649995278 -0.1248278015
H 1.0 -0.1008159226 -1.3937688726 0.0082199512
H 1.0 -1.2211530328 0.3461599010 1.4422405946
O 8.0 0.3787749791 2.3654323453 -0.2310365866
H 1.0 1.1236754799 0.6713655313 0.5782605763
$END
to here -----

Results of geometrical optimization...
HOMO-4 (-9.66 eV):

2-methylbutanal_homo-4.png

HOMO (-6.72 eV):

2-methylbutanal_homo.png

LUMO (-0.49 eV):

2-methylbutanal_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2010/10/29

第75回 台風が気になる

台風対策はとくにしてません。明日の予報を見て判断したいと思います。

☆Done
TDDFT計算16ジョブ投入・15ジョブ解析、ゼミ(抄録会・雑誌会)、その他雑務。


☆レガシーメディア
文科省、海底レアアース獲得へ無人探査機開発前倒し(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720101029eaap.html


☆Weblog
Eastman Chemical、PET事業をメキシコ企業に売却(化学業界の話題)
http://knak.cocolog-nifty.com/blog/2010/10/eastman-chemica.html

日経(大学教授のぶっちゃけ話)
http://junjikido.cocolog-nifty.com/blog/2010/10/post-75c3.html

「博士号持ち=平均以上の収入」という社会を期待してもしょうがない(発声練習)
http://d.hatena.ne.jp/next49/20101028/p1

2010年第3四半期 国産ナフサ基準価格(化学業界の話題)
http://knak.cocolog-nifty.com/blog/2010/10/20103-5859.htmlIi3E

☆論文・総説
Crystal-like periodic mesoporous organosilica bearing pyridine units within the framework
http://pubs.rsc.org/en/Content/ArticleLanding/2010/CC/C0CC01944E

Supported monomeric vanadium catalyst for dehydration of amides to form nitriles
http://pubs.rsc.org/en/Content/ArticleLanding/2010/CC/C0CC02412K

hodium-Catalyzed Asymmetric Conjugate Addition of Arylboroxines to Borylalkenes: Asymmetric Synthesis of β-Arylalkylboranes
http://onlinelibrary.wiley.com/doi/10.1002/anie.201004980/abstract

syn-Selective Rhodium(I)-Catalyzed Allylations of Ketimines Proceeding through a Directed CH Activation/Allene Addition Sequence
http://onlinelibrary.wiley.com/doi/10.1002/anie.201004179/abstract

[GAMESS] 3-methylbutanal (3-メチルブタナール)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of 3-methylbutanal (3-メチルブタナール) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -8.6260871551 0.8749421662 0.3300214703
C 6.0 -7.2694200710 1.5822368130 0.3509679927
H 1.0 -9.3894855332 1.4816633296 0.8290677887
H 1.0 -8.5721023464 -0.0859598896 0.8525170601
H 1.0 -8.9599666725 0.6855646931 -0.6956832439
C 6.0 -6.2110089792 0.7083518085 -0.3342785364
C 6.0 -4.8122008714 1.1470202196 0.0219693617
H 1.0 -6.3117050358 0.7383962193 -1.4246426910
H 1.0 -6.3157311511 -0.3357197082 -0.0182992977
O 8.0 -3.9889524351 0.4048125780 0.5489949547
H 1.0 -4.5396763526 2.1776361235 -0.2573039057
C 6.0 -7.3939840083 2.9529101302 -0.3187481521
H 1.0 -8.1660292061 3.5548414731 0.1726833979
H 1.0 -7.6647510994 2.8561823602 -1.3756098705
H 1.0 -6.4556326572 3.5127667706 -0.2589123669
H 1.0 -6.9841615634 1.7403398880 1.3987133316
$END
to here -----

Results of geometrical optimization...
HOMO-5 (-10.39 eV):

3-methylbutanal_homo-5.png

HOMO (-6.67 eV):

3-methylbutanal_homo.png

LUMO (-0.57 eV):

3-methylbutanal_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2010/10/28

第74回 冬支度

電気ファンヒーターを物入れから出し、セットアップ。少し早いかもしれないが、この寒さでは仕方ない。エアコンの吹き出しは、あさっての方向を向いている。
TDDFT、実験値と数nm程度の差なので使えるかも。

☆Done
TDDFT計算14ジョブ投入・12ジョブ解析、ゼミ(月間報告)、その他雑務。


☆レガシーメディア
工作機械、年間受注額1兆円到達-中国・東南アジアがけん引(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0120101028aaaq.html

物材機構と双葉電子、遠紫外線殺菌デバイス試作で殺菌能力を向上(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720101028eabe.html


☆Weblog
三菱化学小林社長+山形大城戸=日経セミナー(大学教授のぶっちゃけ話) http://junjikido.cocolog-nifty.com/blog/2010/10/post-35a1.html

第1014回 PIIGS問題(代表戸締役 ◆jJEom8Ii3Eの妄言)

☆論文・総説
A computational analysis of intramolecularity in proton transfer reactions
http://pubs.rsc.org/en/Content/ArticleLanding/2010/OB/C0OB00252F

Synthesis, transport activity, membrane localization, and dynamics of oligoester ion channels containing diphenylacetylene units
http://pubs.rsc.org/en/Content/ArticleLanding/2010/OB/C0OB00194E

[GAMESS] 2,2-dimethylpropanal (2,2-ジメチルプロパナール)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of 2,2-dimethylpropanal (2,2-ジメチルプロパナール) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -9.5841038491 2.9854773814 0.9132065101
C 6.0 -8.2801597982 3.0907574278 0.1159393972
H 1.0 -9.6607669942 3.7917632746 1.6520391595
H 1.0 -9.6400741244 2.0380932541 1.4627148764
H 1.0 -10.4581744963 3.0445692888 0.2562015879
C 6.0 -8.2337673238 4.4249605980 -0.6363380231
H 1.0 -9.0677985492 4.5127296661 -1.3406677740
H 1.0 -7.3021551754 4.5282657542 -1.2047695742
H 1.0 -8.2881783299 5.2729569719 0.0562614850
C 6.0 -7.1191060404 2.9816576461 1.0954467214
C 6.0 -8.1732988126 1.9269452548 -0.8743555023
H 1.0 -8.9944906403 1.9438656837 -1.5985596119
H 1.0 -8.2003240967 0.9601199378 -0.3574886762
H 1.0 -7.2299193087 1.9684300140 -1.4312814762
O 8.0 -6.2404115718 3.8269230700 1.2339552758
H 1.0 -7.0959694732 2.0576323561 1.7017615064
$END
to here -----

Results of geometrical optimization...
HOMO-4 (-9.96 eV):

2_2-dimethylpropanal_homo-4.png

HOMO (-6.64 eV):

2_2-dimethylpropanal_homo.png

LUMO (-0.44 eV):

2_2-dimethylpropanal_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2010/10/27

第73回 KCRW

作業用BGM(MじゃなくてVかもしれない)にKCRW World Newsを。
日本のメディアが流さないニュースがたくさんある。

☆Done
TDDFT計算12ジョブ投入・2ジョブ解析、予稿チェック、論文書き、その他雑務。


☆レガシーメディア
政府税調がナフサ免税縮減案、「原料非課税」原則から逸脱(化学工業日報)
http://www.chemicaldaily.co.jp/news/201010/27/01201_4141.html

三菱エンプラ、植物由来ポリアミドのコンパウンド開発(化学工業日報)
http://www.chemicaldaily.co.jp/news/201010/27/01201_2131.html

日産、欧米の電池工場を単独運営(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0420101027aaar.html

東大、ネオジム磁石からレアアースを回収する新技術開発(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720101027eaac.html

国際商品相場、非鉄・貴金属が上昇(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx1220101027ddai.html

政府、補正予算案を閣議決定-歳出規模4.4兆円(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx1520101027abaz.html


☆Weblog
第1013回 規制と緩和(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari

協和発酵キリン、子会社の協和発酵ケミカル売却で合意(化学業界の話題)
http://knak.cocolog-nifty.com/blog/2010/10/post-31de.html

最近の有機化学論文のチョイネタ 5 つ(気ままに有機化学)
http://chemistry4410.seesaa.net/article/167302565.html

☆論文・総説
A New Family of High-Performance Ti Catalysts for Olefin Polymerization
http://onlinelibrary.wiley.com/doi/10.1002/macp.201000254/abstract

Synthesis, Characterization and Field-Effect Transistor Performance of Poly[2,6-bis(3-alkylthiophen-2-yl)benzo[1,2-b;4,5-b′]diselenophene]s
http://onlinelibrary.wiley.com/doi/10.1002/macp.201000447/abstract

[GAMESS] formaldehyde (ホルムアルデヒド)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of formaldehyde (ホルムアルデヒド) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=50 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
O 8.0 -8.6424201877 8.5275540644 0.0000000000
C 6.0 -8.3684046840 7.3339696379 0.0000000000
H 1.0 -7.3302644249 6.9687537269 -0.0000000000
H 1.0 -9.1470446616 6.5528884953 -0.0000000000
$END
to here -----

Results of geometrical optimization...
HOMO (-10.78 eV):

formaldehyde_homo-1.png

HOMO (-7.21 eV):

formaldehyde_homo.png

LUMO (-1.06 eV):

formaldehyde_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2010/10/26

第72回 フォトクロミズム

タイトルに特に意味なし。集めた文献のキーワードのひとつ。
今夜は冷えますなぁ。

☆Done
TDDFT計算1ジョブ投入・22ジョブ解析、予稿・修論原稿チェック、その他雑務。


☆レガシーメディア
電通大、教員人事と研究スペースを一元管理する仕組み確立(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720101026ecaa.html



☆Weblog
センター試験の今後と朝日新聞(大学サバイバル日記)
http://blc.typepad.jp/blog/2010/10/センター試験の今後と朝日新聞.html

センター試験を増やす前にすべきこと(ある理系社会人の思考)
http://fotlife.exblog.jp/14284805/

第1012回 ドル安継続 経済の不満が政治的不安定を招く(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/62004715.htmll


☆論文・総説
Importance of Energy Level Matching for Bonding in Th3+-Am3+ Actinide Metallocene Amidinates, (C5Me5)2[iPrNC(Me)NiPr]An
http://pubs.acs.org/doi/abs/10.1021/ic1013285

Iridium Metal Complexes Containing N-Heterocyclic Carbene Ligands for Blue-Light-Emitting Electrochemical Cells
http://pubs.acs.org/doi/abs/10.1021/ic1009253

Light Insensitive Silver(I) Cyanoximates As Antimicrobial Agents for Indwelling Medical Devices
http://pubs.acs.org/doi/abs/10.1021/ic100830x

[GAMESS] cycloheptyne (シクロヘプチン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of cycloheptyne (シクロヘプチン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=50 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -4.5099619439 2.8496336390 -0.8685322729
C 6.0 -3.4702326416 1.8325326575 -0.8300895581
C 6.0 -2.3958463587 1.5692326974 -0.3784191934
C 6.0 -1.3249925206 2.0688960337 0.4704012355
C 6.0 -2.9371325584 4.1365952225 0.8254382927
C 6.0 -3.8711838220 4.1917029866 -0.4222871520
H 1.0 -5.3214865424 2.5871293085 -0.1811265948
H 1.0 -4.9398184456 2.9547149998 -1.8696277683
H 1.0 -4.6878729304 4.8947884029 -0.2150770370
H 1.0 -3.3047311240 4.6166923854 -1.2610087318
C 6.0 -1.4906217745 3.6080740195 0.5792138455
H 1.0 -3.4158457861 3.5742513676 1.6356684063
H 1.0 -2.8345128273 5.1695272063 1.1834951969
H 1.0 -0.3375583377 1.8268458442 0.0649387345
H 1.0 -1.3953556714 1.6243588686 1.4691748272
H 1.0 -0.8493988145 3.9532372260 1.4000888939
H 1.0 -1.1008751480 4.0769620661 -0.3336238406
$END
to here -----

Results of geometrical optimization...
HOMO (-6.18 eV):

cycloheptyne_homo.png

LUMO (+0.22 eV):

cycloheptyne_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2010/10/25

第71回 なんとかポピュレーション

ディスカッションに必要なデータをピックアップ。
予想通りでホットする。


☆Done
TDDFT計算11ジョブ投入・6ジョブ解析、ゼミ、その他雑務。


☆レガシーメディア
協和発酵キリン、化学品事業売却を決定(化学工業日報)
http://www.chemicaldaily.co.jp/news/201010/25/01601_2121.html

環境省、アジアでETV制度を普及加速(化学工業日報)
http://www.chemicaldaily.co.jp/news/201010/25/04101_4138.html

物質・材料研究機構、太陽電池向けの吸収波長が広い増感色素を開発(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720101025aaam.html

筑波大、ナノ構造を直接観察できる新型顕微鏡を開発(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720101025eaae.html


☆Weblog
オルソゴナルということ(有機化学美術館・分館)
http://blog.livedoor.jp/route408/archives/51612312.html

第1011回 G20の成果と今週の予定(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/61996045.html


☆論文・総説
Hybrid spiropyran–silica nanoparticles with a core-shell structure: sol–gel synthesis and photochromic properties
http://pubs.rsc.org/en/Content/ArticleLanding/2010/JM/C0JM01780A

Structural Inhomogeneity of Interfacial Water at Lipid Monolayers Revealed by Surface-Specific Vibrational Pump−Probe Spectroscopy
http://pubs.acs.org/doi/abs/10.1021/ja106194u

Domination of Local Environment Over Pore Confinement Effects on the Catalytic Performances of Single-Site Cp*IrIII-NHC Heterogeneous vs. Homogeneous H/D Exchange Catalysts
http://onlinelibrary.wiley.com/doi/10.1002/ejic.201000679/abstract

[GAMESS] vinylienecarbene (ビニリデンカルベン) [cyclopropyne (シクロプロピン)]

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of cyclopropyne (シクロプロピン) was tried at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level. However, GAMESS showed the structure of vinylienecarbene (ビニリデンカルベン).

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=50 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -3.4533727498 2.6203955666 0.0383403549
C 6.0 -4.5771598382 1.7475375319 -0.2117583889
C 6.0 -3.5183475068 1.1969680787 -0.2003234633
H 1.0 -3.2886608790 2.9582009414 1.0515835533
H 1.0 -3.1144268074 3.2555417460 -0.7651680502
$END
to here -----

Results of geometrical optimization...
HOMO: (-7.21 eV)

allene_homo.png

LUMO: (-3.67 eV)

allene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2010/10/24

[GAMESS] cyclopentyne (シクロペンチン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of cyclopentyne (シクロペンチン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=50 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -4.2450964373 2.9938216202 -0.2086568458
C 6.0 -3.9668374900 1.5889439963 0.0631840766
C 6.0 -2.8197502652 1.2924845253 0.1966253395
C 6.0 -1.8522290508 2.3751859973 0.0687600319
C 6.0 -2.8188655502 3.6021159535 -0.0053939016
H 1.0 -4.9649299423 3.4380182493 0.4829442701
H 1.0 -4.5874946123 3.1529329285 -1.2369737277
H 1.0 -1.2633514466 2.2936879078 -0.8501554973
H 1.0 -1.1753936255 2.4585906715 0.9238371103
H 1.0 -2.7850580070 4.1584494894 0.9402379237
H 1.0 -2.5466840826 4.2939744534 -0.8084526261
$END
to here -----

Results of geometrical optimization...
HOMO (-6.31 eV):

cyclopentyne_homo.png

LUMO (-2.31 eV):

cyclopentyne_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2010/10/23

[GAMESS] cyclohexyne (シクロヘキシン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of cyclohexyne (シクロヘキシン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=50 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -4.5145891166 2.7786331871 -0.6557400204
C 6.0 -3.6165400114 1.6362337032 -0.5795748494
C 6.0 -2.5061451963 1.5198199762 -0.1487975633
C 6.0 -1.6061089252 2.5016311022 0.4368646622
C 6.0 -2.5063373836 3.7244649278 0.8139714937
H 1.0 -0.8548853324 2.8121665868 -0.2975605019
H 1.0 -1.0854820295 2.1247023597 1.3222114684
C 6.0 -3.6824260656 4.0220224383 -0.1865681634
H 1.0 -5.3833959496 2.6417151300 -0.0040156522
H 1.0 -4.8771706377 2.9427249722 -1.6759567467
H 1.0 -1.8787123874 4.6175795476 0.9167176945
H 1.0 -2.9477390987 3.5357068219 1.8015044247
H 1.0 -4.3612209035 4.7583724838 0.2605688958
H 1.0 -3.2498102609 4.4998016655 -1.0750601913
$END
to here -----

Results of geometrical optimization...
HOMO (-6.20 eV):

cyclohexyne_homo.png

LUMO (-0.82 eV):

cyclohexyne_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2010/10/22

第67回 今週2度目のお好み焼き

月曜日は関西風、今日は自宅で広島風。

☆Done
TDDFT計算21ジョブ投入・22ジョブ解析、ゼミ、その他雑務。


☆レガシーメディア
三井・デュポンポリケミカル、太陽電池用封止シート材を強化(化学工業日報)
http://www.chemicaldaily.co.jp/news/201010/22/01402_2121.html

主要石化製品実績、エチレン9月生産が2ケタ減(化学工業日報)
http://www.chemicaldaily.co.jp/news/201010/22/01201_4435.html

BASF、2010年業績が過去最高へ(化学工業日報)
http://www.chemicaldaily.co.jp/news/201010/22/02501_6767.html

NEDO、環境・エネ分野で世銀と協力(化学工業日報)
http://www.chemicaldaily.co.jp/news/201010/22/04101_4238.html

nintac、銀ナノ粒子で導電性接合材料を開発(化学工業日報)
http://www.chemicaldaily.co.jp/news/201010/22/01601_2131.html

アルバックとオプトラン、光学薄膜用成膜装置の販売で提携(化学工業日報)
http://www.chemicaldaily.co.jp/news/201010/22/04601_2121.html

総合科技会議、来年度の優先度判定-新規事業で「最優先」18件(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720101022eaaf.html

経産省、製品安全規制の法体系の見直し調査開始(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx1520101022abav.html


☆Weblog
会議の日(教授ゴルギアス)
http://gorgias.blog.shinobi.jp/Entry/590/

関関同立新入生意識調査:「大麻手に入る」6割超 について考える(大学を考える)
http://univlog.jugem.jp/?eid=1700

プラスチックエレクトロニクス(大学教授のぶっちゃけ話)
http://junjikido.cocolog-nifty.com/blog/2010/10/post-0398.html


☆論文・総説
A Luminescent Molecular Thermometer for Long-Term Absolute Temperature Measurements at the Nanoscale
http://onlinelibrary.wiley.com/doi/10.1002/adma.201001780/abstract

1,4-Dilithio-1,3-dienes: Reaction and Synthetic Applications
http://pubs.acs.org/doi/abs/10.1021/ar1000583

Diazaphospholenes: N-Heterocyclic Phosphines between Molecules and Lewis Pairs
http://pubs.acs.org/doi/abs/10.1021/ar100041j

[GAMESS] methylidenecyclopropane (メチリデンシクロプロパン) [cyclobutyne (シクロブチン)]

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of cyclobutyne (シクロブチン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level. However, GAMESS showed the structure of methylidenecyclopropane (メチリデンシクロプロパン).

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=50 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -3.9236184916 2.9617476015 -0.0634431786
C 6.0 -4.0528655021 1.5376633250 0.0146338642
C 6.0 -2.9313545310 1.2626217929 0.0628212995
C 6.0 -2.0543629599 2.3329200669 0.0258384810
H 1.0 -4.2165274159 3.5525772693 0.8073250235
H 1.0 -4.1643481148 3.4477725610 -1.0121883184
H 1.0 -1.5494764103 2.6492277194 0.9393246644
H 1.0 -1.4972139795 2.5439223990 -0.8865431765
$END
to here -----

Results of geometrical optimization...
HOMO (-6.99 eV):

methylidenecyclopropane_homo.png

LUMO (-0.24 eV):

methylidenecyclopropane_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2010/10/21

[GAMESS] acrolein (アクロレイン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of acrolein (アクロレイン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=50 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
O 8.0 -9.0798034635 8.2479895379 1.5343791420
C 6.0 -8.7489947893 7.6872985918 0.4971915695
C 6.0 -7.3645608903 7.2251916577 0.2834496836
H 1.0 -9.4622808990 7.5008532012 -0.3228312760
C 6.0 -7.0265606438 6.6195620546 -0.8622378284
H 1.0 -6.6690744930 7.4080952555 1.0941205819
H 1.0 -7.7670632362 6.4625882377 -1.6446527328
C 6.0 -5.6870417345 6.1487895568 -1.1234310492
C 6.0 -5.3350523787 5.5503872379 -2.2672007230
H 1.0 -4.9333663380 6.2905318364 -0.3500221535
H 1.0 -6.0390467953 5.3807855824 -3.0760861715
H 1.0 -4.3144905521 5.2124992382 -2.4198834065
$END
to here -----

Results of geometrical optimization...
HOMO (-7.89 eV):

acrolein_homo-1.png

HOMO (-6.91 eV):

acrolein_homo.png

LUMO (-1.69 eV):

acrolein_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

第69回 羽田新ターミナルオープンはとてもありがたい。

自宅や職場から成田は遠い。羽田から海外へ行けるようになるのはとても助かる。

☆Done
TDDFT計算18ジョブ投入・22ジョブ解析、その他雑務。


☆レガシーメディア
経産省、アジアの化学物質管理制度の整備を支援(化学工業日報)
http://www.chemicaldaily.co.jp/news/201010/21/04101_4138.html

東ガス、次世代燃焼システムに「カイロ」原理(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0820101021aaas.html

経産省、再生可能エネ制度設計で議論開始(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0820101021aaat.html

三井化学、大阪にIPA製造設備を新設(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0820101021cbad.html

内外の非鉄・貴金属相場、中国利上げで大幅下落(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx1220101021ddae.html

中国、2年10カ月ぶり利上げ-資金流入で先進国批判も(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx1520101021abas.html


☆Weblog
COP-MOP5、「名古屋補足議定書」を採択(化学業界の話題)
http://knak.cocolog-nifty.com/blog/2010/10/cop-mop5-efd7.html

どこでしょう、その3(大学教授のぶっちゃけ話)
http://junjikido.cocolog-nifty.com/blog/2010/10/post-c69a.html

第1008回 本音と建前(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/61965794.html


☆論文・総説
RSynthesis and optical properties of organic–inorganic hybrid gels containing fluorescent molecules
http://dx.doi.org/10.1016/j.polymer.2010.09.005

A novel shape memory polynorbornene functionalized with poly(-caprolactone) side chain and cyano group through ring-opening metathesis polymerization
http://dx.doi.org/10.1016/j.polymer.2010.09.009

2010/10/20

第68回 冷蔵庫内の食べ物消化週間

数週間暮らせるほどの食料を貯蔵し、管理している妻は偉いと思います。


☆Done
TDDFT計算15ジョブ投入・16ジョブ解析、ゼミ、その他雑務。


☆レガシーメディア
スマートソーラーインタ、シリコンセル集光型の太陽発電を来年度にも製品化(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0320101020aaas.html

中国産金属ケイ素・マンガン、対日価格が上昇(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx1220101020ddab.html

10月の月例経済報告、景気「足踏み状態」(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx1520101020abaq.html

☆Weblog
第1007回 中国利上げ 欧州ヘッジファンド規制(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/61957834.html

[大学] 報告書の性質とよくある勘違い(発声練習)
http://d.hatena.ne.jp/next49/20101019/p1

第4期科学技術基本計画、パブリックコメント始まる~パブコメ疲れも?(科学政策ニュースクリップ)
http://d.hatena.ne.jp/scicom/20101019/p1


☆論文・総説
Responsive Polymers for Detection and Sensing Applications: Current Status and Future Developments
http://pubs.acs.org/doi/abs/10.1021/ma1005815

Sterically Enhanced, Selective C(CO)-C(α) Bond Cleavage of a Ketones by Rhodium Porphyrin Methyl
http://pubs.acs.org/doi/abs/10.1021/om1007852

[GAMESS] penta-2,4-dien-1-al (ペンタ-2,4-ジエン-1-アール)

http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of penta-2,4-dien-1-al (ペンタ-2,4-ジエン-1-アール) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=50 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
O 8.0 -9.0798034635 8.2479895379 1.5343791420
C 6.0 -8.7489947893 7.6872985918 0.4971915695
C 6.0 -7.3645608903 7.2251916577 0.2834496836
H 1.0 -9.4622808990 7.5008532012 -0.3228312760
C 6.0 -7.0265606438 6.6195620546 -0.8622378284
H 1.0 -6.6690744930 7.4080952555 1.0941205819
H 1.0 -7.7670632362 6.4625882377 -1.6446527328
C 6.0 -5.6870417345 6.1487895568 -1.1234310492
C 6.0 -5.3350523787 5.5503872379 -2.2672007230
H 1.0 -4.9333663380 6.2905318364 -0.3500221535
H 1.0 -6.0390467953 5.3807855824 -3.0760861715
H 1.0 -4.3144905521 5.2124992382 -2.4198834065
$END
to here -----

Results of geometrical optimization...
HOMO (-6.80 eV):

penta-2_4-dien-1-al.png

HOMO (-6.72 eV):

penta-2_4-dien-1-al_homo.png

LUMO (-2.04 eV):

penta-2_4-dien-1-al_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2010/10/19

第67回 発注手続きが煩雑に

ふつう発注手続きは単純になるもんでしょ。煩雑になってどうするよ。

☆Done
TDDFT計算21ジョブ投入・25ジョブ解析、その他雑務。


☆レガシーメディア
三菱ガス化学、高耐熱バイオナイロン開発に成功(化学工業日報)
http://www.chemicaldaily.co.jp/news/201010/19/01401_2131.html

東工大など、地球の内核を超高温高圧状態で再現(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720101019eaab.html

植物エンプラ利用進む-三菱ガス化学、耐熱樹脂開発(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0820101019cbae.html

中外製薬、1分子の抗体が標的抗原の作用を何度も遮断する工学技術確立(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx1020101019ceaq.html

山形県の57社、有機EL関連の事業化へ研究会発足(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx1420101019hlat.html
↑城戸先生のコメント待ち

☆Weblog
伊藤忠、米国のシェールオイル開発に参加、商社の非従来型石油/ガス開発出揃う(化学業界の話題)
http://knak.cocolog-nifty.com/blog/2010/10/post-b8ee.html

第1006回 週末のG20に向けて(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/61949595.html

☆論文・総説
Effects of Coexisting Isomers on Two-Photon Absorption of Organic Molecules in Solutions
http://pubs.acs.org/doi/abs/10.1021/jp103527q

Soft Glassy Colloidal Arrays in an Ionic Liquid: Colloidal Glass Transition, Ionic Transport, and Structural Color in Relation to Microstructure
http://pubs.acs.org/doi/abs/10.1021/jp106872w

Structural, Thermal, and Fluorescence Properties of Eu(DBM)3Phenx Complex Doped in PMMA
http://pubs.acs.org/doi/abs/10.1021/jp1050063

Synthesis of Bis(phenazasiline) Compounds and Their Application for TFT as a Model of Phenazasiline-Containing Polymers
http://www.jstage.jst.go.jp/article/bcsj/83/10/83_1282/_article
↑ばくさん

[GAMESS] nona-2,4,6,8-tetraen-1-al (ノナ-2,4,6,8-テトラエン-1-アール)

http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of nona-2,4,6,8-tetraen-1-al (ノナ-2,4,6,8-テトラエン-1-アール) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=50 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
O 8.0 -9.6523877823 7.9079536300 1.9331959671
C 6.0 -9.2075371521 7.6248976214 0.8279228098
C 6.0 -7.8315096656 7.1188615486 0.6621999228
H 1.0 -9.8051724265 7.7356724301 -0.0919158031
C 6.0 -7.3552909264 6.8506851337 -0.5597960285
H 1.0 -7.2533612319 7.0027576523 1.5716559712
H 1.0 -7.9761030299 6.9999079807 -1.4414535161
C 6.0 -6.0067441502 6.3743285931 -0.7782306370
C 6.0 -5.4759051316 6.2270343654 -2.0008871213
H 1.0 -5.4058713620 6.1580449880 0.1040075053
H 1.0 -6.0622147018 6.4645279400 -2.8865855188
C 6.0 -4.1134909827 5.7891056073 -2.2128056265
C 6.0 -3.5146370854 5.8336185262 -3.4123064436
H 1.0 -3.5623130215 5.4377208038 -1.3426549815
H 1.0 -4.0550839063 6.2079157949 -4.2795153625
C 6.0 -2.1431633639 5.4308420263 -3.6157279757
C 6.0 -1.4979348883 5.6059836671 -4.7757427455
H 1.0 -1.6149781156 4.9741957167 -2.7815157338
H 1.0 -1.9696158461 6.0695031108 -5.6360493767
H 1.0 -0.4630656565 5.2965107517 -4.8817732002
$END
to here -----

Results of geometrical optimization...
HOMO-1 (-6.53 eV):

nona-2_4_6_8-tetraen-1-al_homo-1.png

HOMO (-5.77 eV):

nona-2_4_6_8-tetraen-1-al_homo.png

LUMO (-2.39 eV):

nona-2_4_6_8-tetraen-1-al_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2010/10/18

第66回 バタフライ現象

おなかいっぱい。

☆Done
TDDFT計算33ジョブ投入、32ジョブ解析、論文作成、その他雑務。


☆レガシーメディア
関東化学、超低酸素の脱水溶媒を国内初の開発(化学工業日報)
http://www.chemicaldaily.co.jp/news/201010/15/01602_2131.html

シャープ、太陽電池で増産投資-高効率結晶型生産へ(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0320101018aban.html

大分大・西日本電線、経頭蓋磁気刺激コイルの試作品を完成(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720101018eaab.html

東大、においの好みの生物行動メカニズムを発見(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720101018eaae.html

ラベックス、リサイクルガラスと蓄光顔料を混合した蓄光材料を開発(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0820101018caag.html

☆Weblog
第1005回 通貨不美人競争 今週の予定 週末のG20と米国決算集中週(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/61941080.html

天狗寄席(大学教授のぶっちゃけ話)
http://junjikido.cocolog-nifty.com/blog/2010/10/post-2534.html

指導者不在の国(生きるすべ IKIRU-SUBE 柳田充弘ブログ)
http://mitsuhiro.exblog.jp/15304870/
↑1つだけじゃないですよ。私が知ってるだけで3つ。

評判獲得ゲームの台頭(企業の研究員というお仕事)
http://ameblo.jp/researcher/entry-10678384500.html

☆論文・総説
A DFT study on the Pd-mediated decarboxylation process of aryl carboxylic acids
http://pubs.rsc.org/en/Content/ArticleLanding/2010/DT/C0DT00491J

Simple Conjugated Polymers with On-Chain Phosphorescent Iridium(III) Complexes: Toward Ratiometric Chemodosimeters for Detecting Trace Amounts of Mercury(II)
http://onlinelibrary.wiley.com/doi/10.1002/chem.201000748/abstract

Star-Shaped Oligothiophenes with Unique Photophysical Properties and Nanostructured Polymorphs
http://onlinelibrary.wiley.com/doi/10.1002/chem.201001413/abstract

[GAMESS] hepta-2,4,6-trien-1-al (ヘプタ-2,4,6-トリエン-1-アール)

http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of hepta-2,4,6-trien-1-al (ヘプタ-2,4,6-トリエン-1-アール) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=50 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
O 8.0 -9.3766129703 8.1045536835 1.7754530481
C 6.0 -8.9894823956 7.6742876875 0.6963013989
C 6.0 -7.6063287287 7.1940498931 0.5143148265
H 1.0 -9.6469856768 7.6274106892 -0.1874983995
C 6.0 -7.1913546435 6.7774517015 -0.6886137023
H 1.0 -6.9718562594 7.2222552557 1.3924502210
H 1.0 -7.8678979517 6.7852864155 -1.5412899468
C 6.0 -5.8405726334 6.3172273892 -0.9256529534
C 6.0 -5.3738848953 6.0317083152 -2.1505643553
H 1.0 -5.1863785250 6.2233739978 -0.0602998335
H 1.0 -6.0165762354 6.1411955431 -3.0218808074
C 6.0 -4.0176923364 5.5953377533 -2.3869947484
C 6.0 -3.5107166230 5.4273955085 -3.6138234678
H 1.0 -3.3840064576 5.4030737936 -1.5233995170
H 1.0 -4.0906388561 5.6158605951 -4.5117394484
H 1.0 -2.4824395372 5.1045118259 -3.7450018324
$END
to here -----

Results of geometrical optimization...
HOMO-1 (-6.61 eV):

hepta-2_4_6-trien-1-al_homo-1.png

HOMO (-6.18 eV):

hepta-2_4_6-trien-1-al_homo.png

LUMO (-2.26 eV):

hepta-2_4_6-trien-1-al_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2010/10/17

[GAMESS] 1,3-butadiyne (1,3-ブタジイン)

http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of 1,3-butadiyne (1,3-ブタジイン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 3.0724287386 2.1710083988 -0.2862223727
C 6.0 1.8771473005 2.0653413499 -0.2914918881
C 6.0 0.3504008636 1.9303703238 -0.2982262850
C 6.0 -0.8448803469 1.8247010099 -0.3035020299
H 1.0 4.1324894141 2.2647207272 -0.2815509909
H 1.0 -1.9049406718 1.7309851958 -0.3081829988
$END
to here -----

Results of geometrical optimization...
two HOMOs (-6.94 eV):

butadiyne_homo_1.png

butadiyne_homo_2.png

two LUMOs (-0.46 eV):

butadiyne_lumo_1.png

butadiyne_lumo_2.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2010/10/16

[GAMESS] acetylene (アセチレン)

http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of acetylene (アセチレン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 2.2911901389 2.3889721933 -0.3644207239
C 6.0 1.0990873619 2.2643735485 -0.3004496816
H 1.0 3.3495954384 2.4995984167 -0.4212158162
H 1.0 0.0404454666 2.1537225990 -0.2436418904
$END
to here -----

Results of geometrical optimization...
HOMO (-5.55 eV):

acetylene_homo_1.png

acetylene_homo_2.png

LUMO (+1.52 eV):

acetylene_lumo_1.png

acetylene_lumo_2.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2010/10/15

第65回 ゼミ旅行てやつですな

というわけで行ってきます。

☆レガシーメディア
1―9月の工作機械受注、2.7倍の7029億円(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0120101015bcaq.html

中国版REACH、きょう施行-国際規制と異なる運用(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0520101015caaf.html

明治大、ポリイミドCO2分離膜の作製に成功(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720101015eaab.html


☆Weblog
第1003回 米国差し押さえ問題 二番底懸念 質への逃避(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/61917001.html

☆論文・総説
Electronic effects in iridium C–H borylations: insights from unencumbered substrates and variation of boryl ligand substituents
http://pubs.rsc.org/en/Content/ArticleLanding/2010/CC/C0CC02041A

Metal Triflimidates: Better than Metal Triflates as Catalysts in Organic Synthesis—The Effect of a Highly Delocalized Counteranion
http://onlinelibrary.wiley.com/doi/10.1002/anie.200906407/abstract

Putting a Positive Spin on Molecular Bridges
http://onlinelibrary.wiley.com/doi/10.1002/anie.201002229/abstract

[GAMESS] 1,3,5,7-octatetrayne (1,3,5,7-オクタテトライン)

http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of 1,3,5,7-octatetrayne (1,3,5,7-オクタテトライン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 2.0534625269 2.3626428123 -0.3497710572
C 6.0 0.8606586900 2.2391716815 -0.2892467324
C 6.0 3.5072129735 2.5131051774 -0.4225717756
H 1.0 -0.1980187616 2.1295867811 -0.2356431453
H 1.0 3.7880050086 3.5703001551 -0.4495015430
H 1.0 3.9028118547 2.0341454391 -1.3244883550
H 1.0 3.9900198195 2.0549220847 0.4445305220
$END
to here -----

Results of geometrical optimization...
two HOMOs (-6.37 eV):

octatetrayne_homo_1.png

octatetrayne_homo_2.png

two LUMOs (-2.01 eV):

octatetrayne_lumo_1.png

octatetrayne_lumo_2.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2010/10/14

第64回 アゲハ、飛び立つ

先月から我が家のミカンの樹にアゲハが襲来、大量の卵を産みつけられた。孵った幼虫が育ち、さなぎになり、羽化する頃には葉が半減。
今年はもうアゲハは来ないか。

☆Done
TDDFT計算52ジョブ投入・14ジョブ解析、論文・予稿作成、その他雑務。


☆レガシーメディア
ソニー、米にグーグルプラットフォーム採用したネットTV投入(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0320101014bjae.html

東大など、単純ヘルペスウイルスの感染メカニズム一部解明(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720101014eaaz.html

金、欧州財政不安などの影響で年末に1400ドル超えも(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx1220101014ddam.html

「中国脱出」移民ブーム 富裕層が主役、資金・頭脳の流出加速(SankeiBiz)
http://www.sankeibiz.jp/macro/news/101014/mcb1010140501001-n1.htm


☆Weblog
第1002回 英国二番底懸念(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/61909816.html

インドネシア、アサハンアルミの将来(化学業界の話題)
http://knak.cocolog-nifty.com/blog/2010/10/post-ddb0.html


☆論文・総説
Synthesis of π-Conjugated Polymer Possessing Mercapto-Substituted 1,3-Butadiene-1,4-diyl USamarium-mediated mild and facile method for the synthesis of amides
http://dx.doi.org/10.1016/j.tetlet.2010.09.048

Chemoselective Esterification and Amidation of Carboxylic Acids with Imidazole Carbamates and Ureas
http://pubs.acs.org/doi/abs/10.1021/ol1018882

Bis-exo-2-norbornylboron Triflate for Stereospecific Enolization of 3,3,3-Trifluoropropionates
http://pubs.acs.org/doi/abs/10.1021/ol1016178

Small Band Gap Polymers Synthesized via a Modified Nitration of 4,7-Dibromo-2,1,3-benzothiadiazole
http://pubs.acs.org/doi/abs/10.1021/ol1020724

Palladium-Catalyzed Amination of Unprotected Halo-7-azaindoles
http://pubs.acs.org/doi/abs/10.1021/ol101928m

[GAMESS] propyne (プロピン)

http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of propyne (プロピン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 2.0534625269 2.3626428123 -0.3497710572
C 6.0 0.8606586900 2.2391716815 -0.2892467324
C 6.0 3.5072129735 2.5131051774 -0.4225717756
H 1.0 -0.1980187616 2.1295867811 -0.2356431453
H 1.0 3.7880050086 3.5703001551 -0.4495015430
H 1.0 3.9028118547 2.0341454391 -1.3244883550
H 1.0 3.9900198195 2.0549220847 0.4445305220
$END
to here -----

Results of geometrical optimization...
two HOMOs (-6.97 eV):

propyne_homo_1.png

propyne_homo_2.png

two LUMOs (+1.77 eV):

propyne_lumo_1.png

propyne_lumo_2.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/