2011/01/31

[GAMESS] 1-phosphacyclooct-2-ene (1-ホスファシクロオクト-2-エン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of 1-phosphacyclooct-2-ene (1-ホスファシクロオクト-2-エン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -1.9445156512 2.7884210172 0.8775842345
C 6.0 -2.7643651597 1.4278545904 -1.4776264724
P 15.0 -1.5896739525 2.6515543621 -0.9162032059
H 1.0 -2.2609711031 3.8027615342 -1.3954487445
C 6.0 -1.1081693780 -0.3044957625 0.7837782187
C 6.0 -3.0166818116 0.2108205079 -0.9804420743
C 6.0 -2.4615400329 -0.6178339183 0.1416764101
H 1.0 -2.3682919309 -1.6319533696 -0.2733660471
H 1.0 -3.2349423559 -0.6975708063 0.9160991109
C 6.0 -0.9024026197 2.0858954328 1.7391515628
H 1.0 -1.8941245508 3.8590896239 1.1115254249
H 1.0 -2.9605863295 2.4706524841 1.1351670901
C 6.0 -1.1862180294 0.6106967602 2.0065570158
H 1.0 -0.4270849734 0.2700138927 2.7236567451
H 1.0 -2.1491338802 0.5010833106 2.5194016294
H 1.0 -0.8820616225 2.5883732698 2.7153516549
H 1.0 0.1073073581 2.2000194148 1.3236955723
H 1.0 -0.3728970816 0.0432920835 0.0509429390
H 1.0 -0.7176954657 -1.2650808113 1.1495035543
H 1.0 -3.8001474755 -0.3340854470 -1.5140078771
H 1.0 -3.3518697031 1.7088411886 -2.3515444615
$END
to here -----

Results of geometrical optimization...
HOMO (-7.18 eV):

1-phosphacyclooct-2-ene_homo-1.png

HOMO (-5.77 eV):

1-phosphacyclooct-2-ene_homo.png

LUMO (+0.19 eV):

1-phosphacyclooct-2-ene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

第125回 6-311G(d,f)

有機合成等の実験のハナシはこのブログではたぶん書かないと思います(知的財産絡みで)。
B3LYP/6-311G(d,f)に手を出す。diffuse関数の入ってる6-31+G(d)とどっちが軽いのだろ。

☆Done
TDDFT計算5ジョブ投入・5ジョブ解析、論文書き、雑務。

☆レガシーメディア
住友電工、超電導磁石マグネットシステム開発(化学工業日報)
http://www.chemicaldaily.co.jp/news/201101/31/04601_2131.html

10年の化学品貿易、輸出入とも2ケタ増加(化学工業日報)
http://www.chemicaldaily.co.jp/news/201101/31/02201_4435.html

大日印、高出力LEDパッケージ向け基板を開発(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0320110131bjal.html

横浜国大、レアアース回収で新技術-廃棄物・使用エネ削減(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720110131eaac.html

☆Weblog
第1095回 エジプト危機はヨルダンに波及 不安定化する中東 今週の予定(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/62717878.html

政府、イレッサ訴訟で和解勧告拒否(化学業界の話題)
http://knak.cocolog-nifty.com/blog/2011/01/post-07b3.html

2010年第4四半期 国産ナフサ基準価格(化学業界の話題)
http://knak.cocolog-nifty.com/blog/2011/01/20104-49ad.html

西沢麦夫先生のこと(有機化学美術館・分館)
http://blog.livedoor.jp/route408/archives/51714199.html

☆論文・総説
Purely Heterometallic Lanthanide(III) Macrocycles through Controlled Assembly of Disulfide Bonds for Dual Color Emission
http://pubs.acs.org/doi/abs/10.1021/ja109157g

Catalytic Silicon-Mediated Carbon−Carbon Bond-Forming Reactions of Unactivated Amides
http://pubs.acs.org/doi/abs/10.1021/ja108764d

Ordered Materials for Organic Electronics and Photonics
http://onlinelibrary.wiley.com/doi/10.1002/adma.201002884/abstract

2011/01/30

[GAMESS] 1-phosphacyclohept-2-ene (1-ホスファシクロヘプト-2-エン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of 1-phosphacyclohept-2-ene (1-ホスファシクロヘプト-2-エン was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -1.8523744379 2.9715400140 0.8091074381
C 6.0 -2.7229884650 1.2996880054 -1.2607537446
P 15.0 -1.6732387044 2.7411374008 -1.0068746299
H 1.0 -2.5474734847 3.7476189915 -1.4818587800
C 6.0 -1.4750236770 -0.2008970656 0.3869796144
C 6.0 -2.5423483714 0.1408504682 -0.6132466107
C 6.0 -1.0198407455 2.0009896924 1.6408023477
H 1.0 -1.5127791470 3.9898587179 1.0319485839
H 1.0 -2.9068529557 2.9251799372 1.1042515340
C 6.0 -1.5671242916 0.5713226613 1.7033121437
H 1.0 -0.9778654784 0.0270870015 2.4524653031
H 1.0 -2.6007795948 0.5808958809 2.0715259570
H 1.0 -0.9939583112 2.3838913698 2.6694317629
H 1.0 0.0217550157 1.9846043640 1.2952862556
H 1.0 -3.5341393203 1.3624986623 -1.9828755790
H 1.0 -1.5791587823 -1.2695249212 0.6164659786
H 1.0 -0.4808188617 -0.0939647005 -0.0639101215
H 1.0 -3.2286891487 -0.6725890625 -0.8480032232
$END
to here -----

Results of geometrical optimization...
HOMO-1 (-7.27 eV):

1-phosphacyclohept-2-ene_homo-1.png

HOMO (-5.80 eV):

1-phosphacyclohept-2-ene_homo.png

LUMO (+0.19 eV):

1-phosphacyclohept-2-ene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2011/01/29

[GAMESS] 1-phosphacyclopent-2-ene (1-ホスファシクロペント-2-エン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of 1-phosphacyclopent-2-ene (1-ホスファシクロペント-2-エン) was performed at the B3LYP/6-31G(d) level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -1.7821330080 2.9715318092 0.8083985169
C 6.0 -2.3838125655 1.2323780190 -1.0634324028
P 15.0 -1.9450589751 2.9974305511 -1.0413659050
H 1.0 -3.2452095601 3.5373073277 -1.1870529876
C 6.0 -2.0651444404 0.6495070791 0.1002191666
C 6.0 -1.4716375781 1.5172799937 1.1702938022
H 1.0 -1.0041505322 3.6530716218 1.1635628277
H 1.0 -2.7359647342 3.2769132522 1.2534966329
H 1.0 -2.8321738623 0.7047682986 -1.8967953995
H 1.0 -1.8925962216 1.2755991995 2.1518295461
H 1.0 -0.3898796271 1.3446859791 1.2193254377
H 1.0 -2.2217303596 -0.4092015495 0.2744679365
$END
to here -----

Results of geometrical optimization...
HOMO-1 (-7.48 eV):

1-phosphacyclopent-2-ene_homo-1.png

HOMO (-5.88 eV):

1-phosphacyclopent-2-ene_homo.png

LUMO (+0.28 eV):

1-phosphacyclopent-2-ene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2011/01/28

[GAMESS] 1-oxacyclohept-2-ene (1-オキサシクロヘプト-2-エン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of 1-oxacyclohept-2-ene (1-オキサシクロヘプト-2-エン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -1.5540576787 2.8001158852 -0.2270210506
O 8.0 -2.8294276601 2.3423540826 -0.3687372670
C 6.0 -1.1052776778 4.0458865901 -0.4180767619
H 1.0 -0.8830568059 1.9711603532 -0.0275868270
C 6.0 -3.8124158595 3.0649594623 0.3710283067
C 6.0 -1.9017602127 5.2310009275 -0.8683846546
H 1.0 -0.0336460227 4.2109588711 -0.3209970049
C 6.0 -3.2093309606 5.4758582115 -0.1252907248
H 1.0 -2.0877384533 5.1440808229 -1.9460542813
H 1.0 -1.2743927371 6.1226273877 -0.7423573503
C 6.0 -4.2369904006 4.3625541919 -0.3011522527
H 1.0 -5.1785603737 4.6967536426 0.1507512477
H 1.0 -4.4225907097 4.1953674063 -1.3684563636
H 1.0 -3.0085704413 5.6319429847 0.9422322482
H 1.0 -3.6460454738 6.4106599216 -0.4983797012
H 1.0 -4.6877126871 2.4071959084 0.4240666987
H 1.0 -3.4819888150 3.2232518245 1.4058349138
$END
to here -----

Results of geometrical optimization...
HOMO−1 (-7.70 eV):

1-oxocyclohept-2-ene_homo-1.png

HOMO (-5.80 eV):

1-oxocyclohept-2-ene_homo.png

LUMO (+1.09 eV):

1-oxocyclohept-2-ene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

第124回 白衣で防寒

寒かった。体調悪かった。白衣羽織ると調子が戻った。たぶん冷えのせい。職業病ではないと思う。

☆Done
TDDFT10ジョブ投入・6ジョブ解析、論文書き、雑務。

☆レガシーメディア
住友電工、高温超電導線を使った電磁石開(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0320110128aabf.html

三重大、樹脂合成の共同研究2件へ-技術展示会のアンケート調査奏功(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720110128ecab.html

☆Weblog
林原が私的整理手続き(化学業界の話題)
http://knak.cocolog-nifty.com/blog/2011/01/post-8f35.html

有機EL異業種交流会 in 米沢(大学教授のぶっちゃけ話)
http://junjikido.cocolog-nifty.com/blog/2011/01/el-in-2b39.html


☆論文・総説
Synthesis of a Stable Disilyne Bisphosphine Adduct and Its Non-Metal-Mediated CO2 Reduction to CO
http://onlinelibrary.wiley.com/doi/10.1002/anie.201006265/abstract

Allylic Alcohols: Sustainable Sources for Catalytic Enantioselective Alkylation Reactions
http://onlinelibrary.wiley.com/doi/10.1002/anie.201006522/abstract

Multicolor, large-area fluorescence sensing through oligothiophene-self-assembled monolayers
http://pubs.rsc.org/en/Content/ArticleLanding/2011/CC/C0CC04478D

2011/01/27

[GAMESS] 1-oxacyclohex-2-ene (1-オキサシクロヘキス-2-エン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of 1-oxacyclohex-2-ene (1-オキサシクロヘキス-2-エン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -1.5570331111 2.8583529158 -0.0368634823
O 8.0 -2.8680236578 2.5628218784 0.2284367254
C 6.0 -1.1025880914 4.0364194415 -0.4785849263
H 1.0 -0.9199035506 2.0099260316 0.1763914071
C 6.0 -3.8073769321 3.5247500060 -0.2698341510
C 6.0 -2.0104695774 5.2064661708 -0.6790935495
H 1.0 -0.0421969511 4.1686824976 -0.6726461580
C 6.0 -3.3638393296 4.9602063019 -0.0193901844
H 1.0 -3.2687702206 5.1239433771 1.0617665798
H 1.0 -4.1074370645 5.6693900882 -0.3974505120
H 1.0 -2.1376164459 5.3761616818 -1.7545344842
H 1.0 -1.5570035379 6.1095030522 -0.2561334540
H 1.0 -3.9601565945 3.3418823234 -1.3408782239
H 1.0 -4.7627447238 3.3382209401 0.2319253313
$END
to here -----

Results of geometrical optimization...
HOMO−1 (-8.19 eV):

1-oxocyclohex-2-ene_homo-1.png

HOMO (-5.63 eV):

1-oxocyclohex-2-ene_homo.png

LUMO (+1.31 eV):

1-oxocyclohex-2-ene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

第123回 不思議なことばかり

う〜ん、輪講?場所が微妙なんでなんとも言えません。

☆Done
TDDFT8ジョブ投入、13ジョブ解析、論文書き、雑務。

☆レガシーメディア
ビフィズス菌、O157の感染抑制-理研などメカニズム解明(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720110127eaau.html

☆Weblog
2011年1月発刊の有機化学関連書籍(気ままに有機化学)
http://chemistry4410.seesaa.net/article/182615771.html

有機エレクトロニクス シンポジウム in 米沢(大学教授のぶっちゃけ話)
http://junjikido.cocolog-nifty.com/blog/2011/01/in-7191.html

最先端・次世代研究開発支援プログラム、方針公表(科学政策ニュースクリップ)
http://d.hatena.ne.jp/scicom/20110126/p1
↑書類の追加提出は面接審査対象者のみ。

☆論文・総説
Cs2CO3-mediated synthesis of terminal alkynes from 1,1-dibromo-1-alkenes
http://dx.doi.org/10.1016/j.tetlet.2010.12.071

Iodine-catalyzed transformation of molecules containing oxygen functional groups
http://dx.doi.org/10.1016/j.tet.2010.11.086

2011/01/26

[GAMESS] diethylphosphine (ジエチルホスフィン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of diethylphosphine (ジエチルホスフィン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
P 15.0 -1.6332718369 2.2521466698 -0.2300106602
C 6.0 -2.1512955282 1.4773954943 1.3644353961
C 6.0 -3.6633855449 1.4328412916 1.5013079764
H 1.0 -1.7276069935 2.0516622726 2.1948238997
H 1.0 -1.7509979173 0.4597851256 1.4274141812
H 1.0 -1.9942490300 1.1915743516 -1.0946927373
C 6.0 0.1815341712 1.9185923323 -0.1516219212
H 1.0 -4.0992203107 2.4378229570 1.4709596847
H 1.0 -3.9411419244 0.9765828878 2.4571409770
H 1.0 -4.1218566108 0.8412757406 0.7015005236
H 1.0 0.6140992240 2.4873912902 0.6779119029
C 6.0 0.8790003198 2.3032327762 -1.4449509309
H 1.0 0.3525334242 0.8557758151 0.0509566929
H 1.0 0.7553719740 3.3695183110 -1.6658619107
H 1.0 0.4896182596 1.7343826841 -2.2962025524
H 1.0 1.9521055178 2.0998877076 -1.3683868845
$END
to here -----

Results of geometrical optimization...
HOMO (-6.18 eV):

diethylphosphine_homo.png

LUMO (+1.25 eV):

diethylphosphine_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

第122回 霧島連山新燃岳が噴火

Twitterで知った。情報早い。

☆Done
TDDFT計算12ジョブ投入、17ジョブ解析、研究室ゼミ(検討会)、論文書き、雑務。

☆レガシーメディア
情通機構など、200インチディスプレー開発-メガネなしで巨大3D(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720110126eaag.html

素材各社、大型設備投資が加速-新興国の能力増強続く(日刊工業新聞
http://www.nikkan.co.jp/news/nkx0820110126cbad.html

首都圏リポート/大学の新キャンパス、東京の下町に続々-地元中小と交流期待(日刊工業新聞)http://www.nikkan.co.jp/news/nkx1420110126hlan.html

☆Weblog
Aromaticity of azines (Computational Organic Chemistry)
http://comporgchem.com/blog/?p=1309

持ち込み可でテキストから出題したら(大学という斜陽産業)
http://ameblo.jp/sphinx/entry-10778768539.html

雪(大学教授のぶっちゃけ話)
http://junjikido.cocolog-nifty.com/blog/2011/01/post-5fac.html

☆論文・総説
Synthesis of electroactive polystyrene derivatives para-substituted with π-conjugated oligothiophene via postgrafting functionalization
http://onlinelibrary.wiley.com/doi/10.1002/pola.24531/abstract

Synthesis and characterization of fluorene-based oligomers and polymers incorporating N-arylphenothiazine-S,S-dioxide units http://onlinelibrary.wiley.com/doi/10.1002/pola.24527/abstract

Preparation of poly(p-oxybenzoyl) crystals using direct polymerization of p-hydroxybenzoic acid in the presence of boronic anhydrides
http://onlinelibrary.wiley.com/doi/10.1002/pola.24521/abstract

2011/01/25

[GAMESS] dimethylphosphine (ジメチルホスフィン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of dimethylphosphine (ジメチルホスフィン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
P 15.0 -1.5145174074 1.8613835997 -0.2203041135
H 1.0 -0.2186273311 2.1474865533 0.2706348031
C 6.0 -2.2174734803 3.5520489972 -0.1053203635
C 6.0 -2.2192172814 1.1331158439 1.3089910974
H 1.0 -1.7764148811 4.1963021253 -0.8718694410
H 1.0 -2.0146468558 3.9999644712 0.8714894636
H 1.0 -3.2999878974 3.5313719135 -0.2590351246
H 1.0 -1.7794586524 0.1485654664 1.4946400816
H 1.0 -3.3018289510 1.0106263703 1.2149723891
H 1.0 -2.0161014121 1.7643711916 2.1785810523
$END
to here -----

Results of geometrical optimization...
HOMO (-6.26 eV):

dimethylphosphine_homo.png

LUMO (+1.41 eV):

dimethylphosphine_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

第121回 Silyl ketene acetal

シリルケテンアセタール。昔はケテンシリルアセタールと言っていたような。略号KSAだし。どちらがより一般的なのかは今はあまり気にしていない。

☆Done
TDDFT8ジョブ投入・14ジョブ解析、論文書き、雑務

☆レガシーメディア
首都大東京、エネルギー密度2倍のリチウム二次電池試作-多孔性材でセパレーター(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720110125aaas.html

東大、テラヘルツ波磁場パルスを使ってスピンを高速制御(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720110125eaac.html

北大など、インフルエンザウイルスが細胞に侵入する仕組み解明(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx1020110125eaai.html


☆Weblog
第1090回 スペイン問題と資源高(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/62677794.html

2011年日本化学会各賞発表-学会賞-(ケムステニュース)
http://www.chem-station.com/chemistenews/2011/01/2011--.html

☆論文・総説
A Computational Study of the Heats of Reaction of Substituted Monoethanolamine with CO2
http://pubs.acs.org/doi/abs/10.1021/jp1081627

Photophysical Properties of a Series of Electron-Donating and -Withdrawing Platinum Acetylide Two-Photon Chromophores
http://pubs.acs.org/doi/abs/10.1021/jp104596v

Direct Nucleophilic SN1-Type Reactions of Alcohols
http://onlinelibrary.wiley.com/doi/10.1002/ejoc.201001474/abstract

2011/01/24

[GAMESS] 1-thiacycloprop-2-ene (1-チアシクロプロプ-2-エン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of 1-thiacycloprop-2-ene (1-チアシクロプロプ-2-エン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -1.5626550752 2.3928425107 -0.0878860447
S 16.0 -3.1974719303 2.8142315983 0.0910442219
C 6.0 -1.7899043449 3.6455019154 -0.3672019500
H 1.0 -1.3941058439 4.5868134522 -0.6763068814
H 1.0 -0.8531606284 1.6020011058 -0.0106638575
$END
to here -----

Results of geometrical optimization...
HOMO-1 (-8.33 eV):

1-thiacycloprop-2-ene_homo-1.png

HOMO (-5.14 eV):

1-thiacycloprop-2-ene_homo.png

LUMO (+0.24 eV):

1-thiacycloprop-2-ene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

第120回 修論添削本格化

今日から修論をじっくり見ることに。完成度が上がってきた。

☆Done
TDDFT計算15ジョブ投入・20ジョブ解析、修論添削、雑務。

☆レガシーメディア
一橋大、北京・ソウル大と連携-教育の相乗効果狙う(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720110124eaaf.html

経産省、海洋エネの開発支援再開-波力発電など商業化検証(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0820110124aaab.html

☆Weblog
知られざる接頭辞(有機化学美術館・分館)
http://blog.livedoor.jp/route408/archives/51700974.html

卒業論文は何ページ書くべきか(発声練習)
http://d.hatena.ne.jp/next49/20110123/p1

第1089回 アドバンテッジ、東京スター銀買収資金の返済不履行か(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/62669919.html

☆論文・総説
Chemical Sensing with Polyaniline Coated Single-Walled Carbon Nanotubes
http://onlinelibrary.wiley.com/doi/10.1002/adma.201003304/abstract

Solution-Processable Organic Single Crystals with Bandlike Transport in Field-Effect Transistors
http://onlinelibrary.wiley.com/doi/10.1002/adma.201002682/abstract

2011/01/23

[GAMESS] 1-thiacyclobut-2-ene (1-チアシクロブト-2-エン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of 1-thiacyclobut-2-ene (1-チアシクロブト-2-エン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -1.6682331234 2.5356284419 -0.1783478509
S 16.0 -3.2942851490 2.3670627749 0.3908799191
C 6.0 -1.7029947337 3.8259702895 -0.5431652659
H 1.0 -0.8477623952 1.8175043554 -0.2282915163
C 6.0 -3.1422159952 4.0967179357 -0.1719792312
H 1.0 -3.2981927630 4.8365917080 0.6208931306
H 1.0 -3.8080184935 4.3523807981 -1.0038086874
H 1.0 -0.9477153902 4.4806235532 -0.9733782324
$END
to here -----

Results of geometrical optimization...
HOMO-1 (-8.05 eV):

1-thiacyclobut-2-ene_homo-1.png

HOMO (-5.69 eV):

1-thiacyclobut-2-ene_homo.png

LUMO (+0.03 eV):

1-thiacyclobut-2-ene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2011/01/22

[GAMESS] 1-thiacyclohept-2-ene (1-チアシクロヘプト-2-エン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of 1-thiacyclohept-2-ene (1-チアシクロヘプト-2-エン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -1.3311273016 2.7828209650 -0.2517760399
S 16.0 -2.8419252850 2.0777079180 -0.6851429751
C 6.0 -1.0342135899 4.0817329600 -0.3875115880
H 1.0 -0.5707035783 2.1052283299 0.1277052918
C 6.0 -3.9776508629 3.0532894778 0.3432705760
C 6.0 -1.9173357869 5.1615065398 -0.9408305842
H 1.0 -0.0338140914 4.3991808254 -0.0978654790
C 6.0 -3.1606691219 5.4551184660 -0.1028925261
H 1.0 -2.1877839695 4.9366794898 -1.9795108615
H 1.0 -1.3169657439 6.0797898128 -0.9836843775
C 6.0 -4.2847144700 4.4263752558 -0.2461042594
H 1.0 -5.1594985631 4.8251369741 0.2839632399
H 1.0 -4.5845262780 4.3385633093 -1.2980639428
H 1.0 -2.8906632135 5.5671474037 0.9547157010
H 1.0 -3.5598684807 6.4260468343 -0.4233939986
H 1.0 -4.9111621209 2.4832250784 0.4034958010
H 1.0 -3.5909405124 3.1371788338 1.3650451975
$END
to here -----

Results of geometrical optimization...
HOMO-1 (-7.05 eV):

1-thiacyclohept-2-ene_homo-1.png

HOMO (-5.69 eV):

1-thiacyclohept-2-ene_homo.png

LUMO (+0.05 eV):

1-thiacyclohept-2-ene_homo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2011/01/21

[GAMESS] 1-thiacyclohex-2-ene (1-チアシクロヘキス-2-エン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of 1-thiacyclohex-2-ene (1-チアシクロヘキス-2-エン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -1.3657314954 2.7949939896 -0.0066493883
S 16.0 -2.9484550060 2.2947704218 0.4623870030
C 6.0 -1.0652921522 4.0159784881 -0.4669430426
H 1.0 -0.5738861925 2.0565633208 0.0920778349
C 6.0 -3.9663769034 3.5898610834 -0.2995380266
C 6.0 -2.0165606122 5.1603023465 -0.6544929997
H 1.0 -0.0319109203 4.2154382765 -0.7430966644
C 6.0 -3.3899016734 4.9675926734 -0.0148882112
H 1.0 -3.3242181253 5.1337550659 1.0684914174
H 1.0 -4.0713535319 5.7347887073 -0.4020547399
H 1.0 -2.1370888545 5.3275181302 -1.7318631201
H 1.0 -1.5633430016 6.0703650048 -0.2439804481
H 1.0 -4.0330689010 3.4099438018 -1.3780336702
H 1.0 -4.9779724187 3.5148553963 0.1116949738
$END
to here -----

Results of geometrical optimization...
HOMO-1 (-7.81 eV):

1-thiacyclohex-2-ene_homo-1.png

HOMO (-5.41 eV):

1-thiacyclohex-2-ene_homo.png

LUMO (+0.68 eV):

1-thiacyclohex-2-ene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

第119回 コンフォマー多数

コンフォマーのエネルギー差が5 kJ/molくらいしかないんだが…とうしたものか。

☆Done
TDDFT2ジョブ投入・12ジョブ解析、論文書き、雑務。

☆レガシーメディア
プロ棋士“次の一手”、理研などMRIで思考解明(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720110121eaac.html

銅の国際価格、騰勢強める-一時9781ドルの最高値(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx1220110121ddab.html

進化する車の軽量化素材-炭素繊維・発泡樹脂に注目(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0420110121cbad.html


☆Weblog
第1087回 ご都合主義(代表戸締役 ◆jJEom8Ii3Eの妄言) http://blogs.yahoo.co.jp/daitojimari/62651058.html

展示会場にて(大学教授のぶっちゃけ話)
http://junjikido.cocolog-nifty.com/blog/2011/01/post-6908.html

高柳健次郎(アマチュアサイエンティスト)
http://page-only-one.cocolog-nifty.com/imotora7/2011/01/post-53d8.html

☆論文・総説
Oligo(quinoxalineethynylene)s: synthesis, properties, and Ag+-mediated complanation
http://pubs.rsc.org/en/Content/ArticleLanding/2011/CC/C0CC03501G

Keys for Unlocking Photolabile Metal-Containing Cages
http://onlinelibrary.wiley.com/doi/10.1002/anie.201002542/abstract

How Donor−Bridge−Acceptor Energetics Influence Electron Tunneling Dynamics and Their Distance Dependences
http://pubs.acs.org/doi/abs/10.1021/ar100092v

2011/01/20

[GAMESS] 1-thiacyclopent-2-ene (1-チアシクロペント-2-エン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of [GAMESS] 1-thiacyclopent-2-ene (1-チアシクロペント-2-エン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -1.4368283716 2.7447599300 -0.0888398337
S 16.0 -3.0210484903 2.4882491134 0.5514702488
C 6.0 -1.2515810131 3.9634832162 -0.6026666392
H 1.0 -0.6737553542 1.9768409630 -0.0467081917
C 6.0 -3.6578514313 4.0492828525 -0.1454955040
C 6.0 -2.4331587326 4.8799990174 -0.5313720637
H 1.0 -2.2450708034 5.6618858199 0.2132356599
H 1.0 -2.6007400706 5.3750339613 -1.4937907869
H 1.0 -0.3068167913 4.2871295766 -1.0195605975
H 1.0 -4.2896480572 4.5703900919 0.5797602058
H 1.0 -4.2615425775 3.8171326644 -1.0290454085
$END
to here -----

Results of geometrical optimization...
HOMO-1 (-8.05 eV):

1-thiacyclopent-2-ene_homo-1.png

HOMO (-5.36 eV):

1-thiacyclopent-2-ene_homo.png

LUMO (+0.54 eV):

1-thiacyclopent-2-ene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

第118回 もつれ

本日日本化学会春季年会の予稿締切日。月曜日にdone。
ロンドンである国際会議、どうすっかね。日程が近いシンガポールの申込がリジェクトされたらエントリー、か。

☆Done
TDDFT計算8ジョブ投入・14ジョブ解析、研究室Web更新、論文書き、その他雑務

☆レガシーメディア
物材機構、電子対の量子もつれをあやつる理論を確立(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720110120eaah.html

慶大など、半導体中の量子もつれ検出に成功(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720110120eaad.htmlw

☆Weblog
第1086回 本音と建前(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/62644484.html

なんで科研費を申請しないのかと聞かれたら(大学という斜陽産業)
http://ameblo.jp/sphinx/entry-10773040695.html

研究者ノート(大学教授のぶっちゃけ話)
http://junjikido.cocolog-nifty.com/blog/2011/01/post-8768.html

☆論文・総説
Dramatic Enhancement of Superacid-Catalyzed Polyhydroxyalkylation Reactions
http://pubs.acs.org/doi/abs/10.1021/ma102267f

Lanthanide(III) 4,6-Dimethylpyrimidine-2-thionate Complexes as Efficient Catalysts for Isocyanate Cyclodimerization
http://pubs.acs.org/doi/abs/10.1021/om100671s

2011/01/19

[GAMESS] 1-thiacyclooct-2-ene (1-チアシクロオクト-2-エン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of 1-thiacyclooct-2-ene (1-チアシクロオクト-2-エン was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -1.2697977011 2.7777195462 -0.3605082322
S 16.0 -2.7763599756 2.0391934896 -0.7523847681
C 6.0 -1.0061025061 4.0894513145 -0.4382961285
H 1.0 -0.4819620342 2.1072299352 -0.0260911360
C 6.0 -3.7555907930 2.5913169070 0.6770633224
C 6.0 -1.8780108656 5.2128863315 -0.9253444312
H 1.0 0.0019195651 4.3957921628 -0.1586433451
C 6.0 -3.1279994159 5.5348133194 -0.0947206230
H 1.0 -2.1261916125 5.0625888527 -1.9827993319
H 1.0 -1.2460632041 6.1122286616 -0.9099552634
C 6.0 -4.3891958923 4.7998798229 -0.5616170963
H 1.0 -2.9480823606 5.3927550407 0.9770475673
H 1.0 -3.3226007717 6.6080240989 -0.2263473894
C 6.0 -4.8214961236 3.6192259608 0.3117226562
H 1.0 -5.2452207520 4.0107069225 1.2457713571
H 1.0 -5.6510603219 3.1088406288 -0.1953614992
H 1.0 -4.2921054985 4.4810972327 -1.6061838831
H 1.0 -5.2218802931 5.5161005815 -0.5581673326
H 1.0 -3.1038682114 2.9879348628 1.4636200558
H 1.0 -4.2447941536 1.7096332515 1.1058226094
$END
to here -----

Results of geometrical optimization...
HOMO-1 (-6.86 eV):

1-thiacyclooct-2-ene_homo-1.png

HOMO (-5.77 eV):

1-thiacyclooct-2-ene_homo.png

LUMO (+0.05 eV):

1-thiacyclooct-2-ene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

第117回 コンフォマーで悩む→絨毯爆弾方式に

DFT構造最適化、コンフォマー候補が複数現れ悩む。スタートが違うとゴールが違うというやつ。しょうがないのでねじるべき単結合4本を適当にねじった候補を大量に用意してジョブ投入。どこかに「落としどころ」があると思う。

☆Done
TDDFT計算12ジョブ投入・14ジョブ解析、論文書き、雑務

☆レガシーメディア
昨年の工作機械受注、前年比2.4倍の9786億円-日工会確報(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0120110119bcap.html

JAXA、あす「こうのとり」打ち上げ-実験機材などISSに運搬(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720110119eaae.html

九州大学学術研究都市推進機構、産学官で交流組織-街づくりに地元の声(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx1520110119hmah.html

京大と武田薬、肥満症・統合失調症治療薬を共同開発(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx1020110119cebe.html

☆Weblog
Has a cyclobutadiene species been isolated? (Part 2) (Computational Organic Chemistry)
http://comporgchem.com/blog/?p=1394

第1085回 先送り(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/62636718.html

☆論文・総説
Microwave-assisted TCNE/TCNQ addition to poly(thienyleneethynylene) derivative for construction of donor–acceptor chromophores
http://onlinelibrary.wiley.com/doi/10.1002/pola.24515/abstract

A photo-degradable helix: Synthesis, structure, and photolysis of optically active poly[2,7-bis(4-t-butylphenyl)-9-methylfluoren-9-yl acrylate]
http://onlinelibrary.wiley.com/doi/10.1002/pola.24507/abstract

Hyperbranched poly(arylene ethynylene)s with triphenylamine core for polymer light-emitting diodes
http://onlinelibrary.wiley.com/doi/10.1002/pola.24459/abstract

2011/01/18

[GAMESS] 1-oxacyclopent-2-ene (1-オキサシクロペント-2-エン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of 1-oxacyclopent-2-ene (1-オキサシクロペント-2-エン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -1.5992925032 2.8378854415 -0.1003907933
O 8.0 -2.9032213327 2.7247042395 0.3287110640
C 6.0 -1.2494838516 4.0107244566 -0.6133046957
H 1.0 -0.9913961751 1.9624616438 0.0563304325
C 6.0 -3.5208371008 3.9473288207 -0.1273832740
C 6.0 -2.4192922211 4.9130817836 -0.5585874361
H 1.0 -2.2660846090 5.7028748145 0.1839056120
H 1.0 -2.6470416075 5.3762031765 -1.5226304365
H 1.0 -0.2663910744 4.2749890288 -0.9714335456
H 1.0 -4.1336841810 4.3631068410 0.6791727215
H 1.0 -4.1813170367 3.7008269601 -0.9674025595
$END
to here -----

Results of geometrical optimization...
HOMO-1 (-9.01 eV):

1-oxacyclopent-2-ene_homo-1.png

HOMO (-5.47 eV):

1-oxacyclopent-2-ene_homo.png

LUMO (+1.22 eV):

1-oxacyclopent-2-ene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

第116回 コンフォマー探し

ホスホン酸のコンフォマー探求。候補はふたつ。MOPACではB案が有利。DFTでは…さて。

☆Done
TDDFT計算3ジョブ投入・24ジョブ解析、修論チェック、雑務。

☆レガシーメディア
日立、研究開発体制を刷新-国内8研究所を三つに集約(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0320110118bjah.html

名大など、光合成たんぱく質で酸素と電流取り出せるガラス粒子開発(日刊工業新聞
http://www.nikkan.co.jp/news/nkx0720110118aaaq.html

広島大、特許への関心を全学的に向上-出願の支援強化(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720110118aaaq.html

経産省、熱利用設備の普及促進へ太陽熱の補助要件を緩和(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0820110118abap.html

☆Weblog
第1084回 禅問答(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/62630308.html

水銀条約とPVC(化学業界の話題)
http://knak.cocolog-nifty.com/blog/2011/01/pvc-82ed.html

News from Science Online 2011 (Computational Organic Chemistry)
http://comporgchem.com/blog/?p=1431

☆論文・総説
The Influence of the Linkage Pattern on the Optoelectronic Properties of Polysilafluorenes: A Theoretical Study
http://pubs.acs.org/doi/abs/10.1021/jp108476x

Two-Photon Absorption Properties of Two-Dimensional π-Conjugated Chromophores: Combined Experimental and Theoretical Study
http://pubs.acs.org/doi/abs/10.1021/jp107044w

Equilibrium Acidities of Superacids
http://pubs.acs.org/doi/abs/10.1021/jo101409p

Understanding the Electronic Reorganization along the Nonpolar [3 + 2] Cycloaddition Reactions of Carbonyl Ylides.
http://pubs.acs.org/doi/abs/10.1021/jo101367v

2011/01/17

[GAMESS] 1-oxacyclooct-2-ene (1-オキサシクロオクト-2-エン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of 1-oxacyclooct-2-ene (1-オキサシクロオクト-2-エン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -1.5285969545 2.7875794082 -0.3130364682
O 8.0 -2.8182911877 2.3762790800 -0.4820336300
C 6.0 -1.0805098488 4.0368192895 -0.4825762537
H 1.0 -0.8803792184 1.9514284521 -0.0808578516
C 6.0 -3.6013522632 2.6532857240 0.6783426415
C 6.0 -1.8560229037 5.2662510389 -0.8611206772
H 1.0 -0.0082632746 4.1910305667 -0.3663995427
C 6.0 -3.1667802821 5.5622860585 -0.1181916207
H 1.0 -2.0192130958 5.2671129363 -1.9458556250
H 1.0 -1.1906166788 6.1188935499 -0.6669678386
C 6.0 -4.3689125195 4.7472058476 -0.6018425923
H 1.0 -3.0312878220 5.4754261718 0.9661584892
H 1.0 -3.3990769985 6.6191780811 -0.3071784844
C 6.0 -4.7538718468 3.5746059716 0.3033949494
H 1.0 -5.2271324669 3.9461543035 1.2200170474
H 1.0 -5.5171986802 2.9895260963 -0.2249894582
H 1.0 -4.2052868171 4.3910148522 -1.6261602062
H 1.0 -5.2409624944 5.4120291120 -0.6546812285
H 1.0 -3.0135835062 3.0891885319 1.4980944289
H 1.0 -3.9991240622 1.7021238515 1.0505110291
$END
to here -----

Results of geometrical optimization...
HOMO-1 (-8.33 eV):

1-oxacyclooct-2-ene_homo-1.png

HOMO (-5.61 eV):

1-oxacyclooct-2-ene_homo.png

LUMO (+1.44 eV):

1-oxacyclooct-2-ene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

第115回 センター試験の化学の問題

最初の問がどうも納得いかない。サリチル酸て電解質か?

☆Done
TDDFT計算3ジョブ投入・16ジョブ解析、論文書き、雑務。

☆レガシーメディア
京大、RNAでナノ構造体をつくる技術開発(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720110117eaab.html

東工大など、材料内結晶の構造変化をパルスX線で観測(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0720110117eaaf.html

総合化学各社、二次電池材料で新戦略-車載用市場拡大に対応(日刊工業新聞)
http://www.nikkan.co.jp/news/nkx0820110117cbal.html


☆Weblog
第1083回 今週の予定 米国決算集中週(代表戸締役 ◆jJEom8Ii3Eの妄言)
http://blogs.yahoo.co.jp/daitojimari/62622862.html

MOFのチカラ(企業の研究員の日常)
http://researcher-station.blogspot.com/2011/01/mof.html

[書籍] 鈴木章 ノーベル化学賞への道(大学を考える)
http://univlog.jugem.jp/?eid=1824


☆論文・総説
Catalytic alkylation of aryl Grignard reagents by iron(III) amine-bis(phenolate) complexes
http://pubs.rsc.org/en/Content/ArticleLanding/2011/DT/C0DT01239D

Recent developments in transition metal diaryl chemistry
http://pubs.rsc.org/en/Content/ArticleLanding/2011/DT/C0DT01247E

2011/01/16

[GAMESS] 1-oxacycloprop-2-ene (1-オキサシクロプロプ-2-エン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of 1-oxacycloprop-2-ene (1-オキサシクロプロプ-2-エン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----
! DFT, B3LYP/6-31G(d), optimization
$CONTRL DFTTYP=B3LYP SCFTYP=RHF RUNTYP=OPTIMIZE $END
$SYSTEM TIMLIM=600000 MEMORY=80000000 $END
$STATPT OPTTOL=0.0001 NSTEP=100 PROJCT=.FALSE. $END
$BASIS GBASIS=N31 NGAUSS=6 NDFUNC=1 $END
$GUESS GUESS=HUCKEL $END
$SCF DIRSCF =.TRUE. $END

$DATA

C1
C 6.0 -1.5720558156 2.3964310470 -0.0871540196
O 8.0 -2.8243270951 2.8648238878 0.0128135554
C 6.0 -1.7977281026 3.6402184376 -0.3644859633
H 1.0 -1.5831589123 4.6219723232 -0.6521578378
H 1.0 -1.0200278972 1.5179448869 0.0399697537
$END
to here -----

Results of geometrical optimization...
HOMO−1 (-9.58 eV):

1-oxacyclooct-2-ene_homo-1.png

HOMO (-5.06 eV):

1-oxacycloprop-2-ene_homo.png

LUMO (-0.03 eV):

1-oxacycloprop-2-ene_lumo.png

Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/

2011/01/15

第114回 PACIFICHEM@ハワイで見つけました。

「酔心」。ホノルルのドンキホーテだったけな。
当日は大雨、天井から雨漏りしまくってました。

110115.png

[GAMESS] 1-oxacyclohept-2-ene (1-オキサシクロヘプト-2-エン)

GAMESS calculation results - kyoroski
http://www8.ocn.ne.jp/~ymakioka/

[GAMESS] GAMESSでかんたん(?)分子軌道計算…その1:インストールから計算実行まで。ただしMac版。
http://kyoroski.blogspot.com/2010/08/gamess-gamess1mac.html

DFT-geometrical optimization of 1-oxacyclohept-2-ene (1-オキサシクロヘプト-2-エン) was performed at the B3LYP/6-31G(d) level. Then energy levels were calculated at the same level.

Content of the input file from here -----

to here -----

Results of geometrical optimization...
HOMO-1 (-7.70 eV):
1-oxacyclohept-2-ene_hmo-1.png
HOMO (-5.80 eV):
1-oxacyclohept-2-ene_homo.png
LUMO (+1.09 eV):
1-oxacyclohept-2-ene_lumo.png
Molecule modeling: Avogadro
http://avogadro.openmolecules.net/wiki/Main_Page
Geometry optimization and energy calculation: GAMESS-US
http://www.msg.chem.iastate.edu/gamess/
Structure display: MacMolPlt
http://www.scl.ameslab.gov/MacMolPlt/